FC923317

Overview
NameFC923317
Unique NameFC923317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923317_ssr53 microsatellite FC923317_ssr53:53..67. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of FC923317 vs. ExPASy Swiss-Prot
Match: Y1686_ARATH (Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.225e-79
Identity = 139/184 (75.54%), Postives = 156/184 (84.78%), Query Frame = 3 
Query:  135 TCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASKNDVIPV 686
            TCGNVPLESSF +VPRC+YTST LYEYRGWGSK AN +HR FTWGLRS ER  VDFYISDFQSGLRALVKTG GA+VTP VDDS+ ID   G E++SP+F+RWL ++NL+SDDRIMRLKEGYIKEGSTVSV+GVVQRNDNVLMIVP  EP+  G QW +C  P SL+GIVLRCED+S  D IPV
Sbjct:  291 TCGNVPLESSFHRVPRCVYTSTCLYEYRGWGSKPANSSHRHFTWGLRSSERHVVDFYISDFQSGLRALVKTGSGAKVTPLVDDSVVIDFKQGSEQVSPDFVRWLGKKNLTSDDRIMRLKEGYIKEGSTVSVIGVVQRNDNVLMIVPSSEPLAAGWQWRRCTFPTSLEGIVLRCEDSSNVDAIPV 474
The following BLAST results are available for this feature:
BLAST of FC923317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1686_ARATH1.225e-7975.54Uncharacterized membrane protein At1g16860 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionC31703F07EF StrClemenN Citrus clementina cDNA clone C31703F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923317 ID=FC923317; Name=FC923317; organism=Citrus clementina; type=EST; length=741bp
GCCCCATTTTCTAGTGAGAGAAACAGCAAAAGATGTCTCCAAATTTTCAG
ATTTCTTCTTCTTCTTCTTTTTCTTCTTCTGCTGCTACTACTGGTACTGC
TATAGTCCTGCTACTACTACTTTAACTGGTTGTCACCTGCGGTAATGTTC
CTCTGGAATCATCCTTCCAAAAAGTTCCTAGATGTATATACACATCCACA
AGTTTGTATGAGTACCGAGGATGGGGTTCAAAAGCTGCCAACCCCACACA
TCGTCGTTTTACTTGGGGGCTCCGATCATTAGAAAGGCGCGCGGTTGACT
TCTACATCTCTGATTTCCAGTCTGGGTTAAGAGCATTGGTTAAAACTGGG
TATGGAGCAAGGGTGACTCCTTATGTTGACGATTCCCTTGCCATTGATGT
CAATCCTGGCAAGGAAGAATTATCTCCGGAGTTCATCAGGTGGTTGGCGG
AGAGGAATCTTTCAAGTGATGATCGTATAATGCGACTGAAAGAGGGGTAT
ATCAAAGAAGGAAGTACTGTTAGTGTAATGGGAGTTGTTCAGAGGAATGA
CAACGTGCTCATGATTGTCCCTCCGCCTGAACCTATCACAACAGGATGCC
AATGGGCCAAATGTATTGTTCCAGCTAGCCTTGACGGAATTGTATTAAGA
TGCGAAGATGCCTCCAAGAACGACGTCATACCAGTTTAGTAGTACGTGCA
CCGCGAGCTTTTTCCTCTATTGACTGTTAGAAATATTTCCC
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