FC923324

Overview
NameFC923324
Unique NameFC923324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14246 contig Ccv1_Contig14246:1..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 6.722e-106
Identity = 195/213 (91.55%), Postives = 205/213 (96.24%), Query Frame = 2
Query:   53 MSEGEDAVRRRNA-MTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            MS+G+DA RRR A +T+YRKKLL HKE+ESRVR+ +ENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGN+SYSAVGGL DQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTL + +IASNIDANFLKVVSSAIIDKY
Sbjct:    1 MSDGDDAARRRTAAVTDYRKKLLHHKELESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY 213          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 3.689e-104
Identity = 192/213 (90.14%), Postives = 205/213 (96.24%), Query Frame = 2
Query:   53 MSEGEDAVRRRNA-MTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            M++ +++VRRR A ++EYRKKLLQHKE+ESRVR+ +ENLR AKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGN+SYSAVGGL DQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTL + +IASNIDANFLKVVSSAIIDKY
Sbjct:    1 MTDVDESVRRRTAAVSEYRKKLLQHKELESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKY 213          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.144e-79
Identity = 142/203 (69.95%), Postives = 172/203 (84.73%), Query Frame = 2
Query:   80 RRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            R  A+ +YRKKLL+HKEI+ R++ ++E L+   K++ K+E+DLK+LQSVGQI+GEVL+ L  E+ IVKA++GPRYVVGCR ++DK KL  GTRV LDMTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF RVGI PPKG LLYGPPGTGKTL + ++AS +D NFLKVVSS+I+DKY
Sbjct:    5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKY 207          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.144e-79
Identity = 142/203 (69.95%), Postives = 172/203 (84.73%), Query Frame = 2
Query:   80 RRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            R  A+ +YRKKLL+HKEI+ R++ ++E L+   K++ K+E+DLK+LQSVGQI+GEVL+ L  E+ IVKA++GPRYVVGCR ++DK KL  GTRV LDMTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF RVGI PPKG LLYGPPGTGKTL + ++AS +D NFLKVVSS+I+DKY
Sbjct:    5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKY 207          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.144e-79
Identity = 142/203 (69.95%), Postives = 172/203 (84.73%), Query Frame = 2
Query:   80 RRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            R  A+ +YRKKLL+HKEI+ R++ ++E L+   K++ K+E+DLK+LQSVGQI+GEVL+ L  E+ IVKA++GPRYVVGCR ++DK KL  GTRV LDMTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF RVGI PPKG LLYGPPGTGKTL + ++AS +D NFLKVVSS+I+DKY
Sbjct:    5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKY 207          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.144e-79
Identity = 142/203 (69.95%), Postives = 172/203 (84.73%), Query Frame = 2
Query:   80 RRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            R  A+ +YRKKLL+HKEI+ R++ ++E L+   K++ K+E+DLK+LQSVGQI+GEVL+ L  E+ IVKA++GPRYVVGCR ++DK KL  GTRV LDMTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF RVGI PPKG LLYGPPGTGKTL + ++AS +D NFLKVVSS+I+DKY
Sbjct:    5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKY 207          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 283.108 bits (723), Expect = 9.468e-76
Identity = 139/203 (68.47%), Postives = 171/203 (84.24%), Query Frame = 2
Query:   80 RRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            R  A+ +Y+  LLQH+E +S+++ ++   R   K+++KTEDD+KSLQSVGQIIGEVL+ LD+ER IVKASSGPRYVVGCR+ VD+  L  G RV LDMTTLTIMR LPREVDP+VYNM  EDPG++S++ VGGL++QIRELRE IELPL NPELFLRVGIKPPKGVLLYGPPGTGKTL + ++A+++  NFLKVVSSAI+DKY
Sbjct:    4 RDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKY 206          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 278.87 bits (712), Expect = 1.785e-74
Identity = 135/222 (60.81%), Postives = 175/222 (78.83%), Query Frame = 2
Query:   23 FATSISPTATMSEGEDAVRRRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            F+  + PT      ++   R  A+  YR+KL + ++IE +++ +++      K+F+K+E+D+KSLQSVGQI+GEVL+ L  E+ IVKA++GPRYVVGCR  ++KE+L  GTRV LDMTTLTIMR LPREVDP+VY M HEDPGN+SYS VGGL++QIRELRE +ELPL+NPELF RVGI PPKG LL+GPPGTGKTL + ++AS +D NFLKVVSSAI+DKY
Sbjct:    6 FSNMVEPTGPAIVEDE---RTKALNSYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKY 224          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.729e-69
Identity = 128/208 (61.54%), Postives = 162/208 (77.88%), Query Frame = 2
Query:   68 DAVRRRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKL-TSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            +  ++  A+  YR +L++HK  E R+    E ++  KK+F KTED +K++Q +G+IIGEVLR LD ER IVKA +GPRYVV C +  DK  L   G RV LD+TTLTI++ LPREVDP+++NM  E PG+VSY  +GGLS+QIRELRE +ELPLM PELF+RVGIK PKGVLLYGPPGTGKTL + +IASN++ANFLKVVSSAI+DKY
Sbjct:    4 EETKKEQALQNYRDRLIEHKNAELRLNKAHELIKKLKKDFQKTEDHIKTIQYIGEIIGEVLRSLDEERFIVKACNGPRYVVRCANYQDKAHLLVPGARVTLDLTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELREVVELPLMIPELFIRVGIKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKY 211          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 249.98 bits (637), Expect = 8.882e-66
Identity = 115/200 (57.50%), Postives = 160/200 (80.00%), Query Frame = 2
Query:   89 AMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            A+ ++++KLL+H+  + +++  ++N+R  +K ++KTE+D+K+LQS+GQ+IGEV++ L  E+ IVKASSGPRY+VG R+ VD+ KL  G RV LD+TTLTIMR LPRE DP+VYNM   + G +++  +GGL++QIRELRE IELPL NPE+F RVGIKPPKGVLLYGPPGTGKTL + ++A+ I ANF+   +S I+DKY
Sbjct:   56 ALNQFKRKLLEHRRYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKY 255          
The following BLAST results are available for this feature:
BLAST of FC923324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
PS10B_ARATH6.722e-10691.5526S protease regulatory subunit S10B homolog B OS=... [more]
PS10A_ARATH3.689e-10490.1426S protease regulatory subunit 10B homolog A OS=A... [more]
PRS10_SPETR3.144e-7969.9526S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE3.144e-7969.9526S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN3.144e-7969.9526S protease regulatory subunit S10B OS=Homo sapie... [more]
PRS10_BOVIN3.144e-7969.9526S protease regulatory subunit S10B OS=Bos taurus... [more]
PRS10_SCHPO9.468e-7668.47Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PRS10_CAEEL1.785e-7460.81Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS10_DICDI1.729e-6961.5426S protease regulatory subunit S10B OS=Dictyostel... [more]
PRS10_YEAST8.882e-6657.5026S protease subunit RPT4 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC31703G03EF StrClemenN Citrus clementina cDNA clone C31703G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923324 ID=FC923324; Name=FC923324; organism=Citrus clementina; type=EST; length=688bp
GAAGCTTACGAGACTCGATTGATTTGCTACATCAATATCTCCGACTGCAA
CGATGAGCGAAGGAGAAGACGCCGTTAGACGCCGTAATGCCATGACGGAG
TACCGTAAGAAGCTACTCCAGCACAAAGAAATCGAATCTAGAGTTCGATC
TGTTAAGGAGAATTTGAGAGCTGCAAAGAAGGAGTTCAACAAAACAGAAG
ATGATTTGAAGTCTCTTCAAAGTGTTGGGCAGATCATTGGAGAAGTTCTC
AGACCTCTTGACAATGAACGCTTGATTGTTAAAGCTAGCAGCGGGCCCCG
TTATGTGGTTGGATGCCGCAGCAAAGTGGATAAAGAGAAGTTGACTTCGG
GAACAAGAGTTGTTCTTGATATGACAACGCTCACAATCATGCGAGCTCTT
CCTCGTGAAGTTGATCCGGTTGTATATAACATGTTGCATGAGGATCCGGG
TAATGTTAGCTATTCGGCTGTGGGTGGTTTATCTGATCAGATCAGAGAAT
TAAGGGAATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGA
GTTGGAATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAAC
TGGCAAGACATTATTNAGCACGAGCATTGCCAGTAACATAGATGCAAATT
TTCTGAAGGTGGTTTCAAGTGCCATTATTGATAAGTAC
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