FC923327

Overview
NameFC923327
Unique NameFC923327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14562 contig Ccv1_Contig14562:163..773. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC923327 vs. ExPASy Swiss-Prot
Match: BET11_ARATH (Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET11 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.965e-35
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 2 
Query:  143 ERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR 394
            ERALEGLQDRV LLKRLSGDINEEVDTHNRML+RMGNDMD+SRG LSGTMD+FK VFETKSSRRM TLVASFV +FL++YYLTR
Sbjct:   39 ERALEGLQDRVILLKRLSGDINEEVDTHNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSRRMLTLVASFVGLFLVIYYLTR 122
[Close]
BLAST of FC923327 vs. ExPASy Swiss-Prot
Match: BET12_ARATH (Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET12 PE=2 SV=4)

HSP 1 Score: 112.079 bits (279), Expect = 6.909e-31
Identity = 50/88 (56.82%), Postives = 75/88 (85.23%), Query Frame = 2 
Query:  143 ERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR*MIY 406
            + ALE LQDRV+ LKR++GDI+EEV+ HNR+L+++GN MD++RG++SGT+++FK+VFE KS+R+   L+A FV++FLI+YYL R + Y
Sbjct:   40 DEALENLQDRVSFLKRVTGDIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVFEKKSNRKSCKLIAYFVLLFLIMYYLIRLLNY 127

HSP 2 Score: 43.1282 bits (100), Expect = 6.909e-31
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 3 
Query:   30 MNSRRDYRNSKAALFDGI---EEGGIRASSSYSHEIDEHDKKE 149
            MN RR+ R S+ +LFDG+   EEG +RASSSY+H  DE D  E
Sbjct:    1 MNFRRENRASRTSLFDGLDGLEEGRLRASSSYAH--DERDNDE 41
The following BLAST results are available for this feature:
BLAST of FC923327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BET11_ARATH4.965e-3586.90Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET... [more]
BET12_ARATH6.909e-3156.82Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET... [more]
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Properties
Property NameValue
Genbank descriptionC31703G09EF StrClemenN Citrus clementina cDNA clone C31703G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923327 ID=FC923327; Name=FC923327; organism=Citrus clementina; type=EST; length=610bp
AAGCGAAGAAAGGCTGTGATCTTTGAGTCATGAATTCTAGAAGGGACTAC
CGTAATAGTAAAGCCGCACTTTTTGATGGCATTGAGGAGGGTGGCATCAG
AGCCTCCTCTTCTTACTCCCATGAAATTGACGAGCATGATAAGAAAGAGC
ATTGGAAGGATTGCAAGATAGAGTCAATCTTCTGAAGAGACTCTCAGGTG
ATATAAATGAAGAGGTTGACACACACAATCGCATGTTGGAACGGATGGGA
AATGATATGGATGCTTCAAGAGGAGTCCTATCAGGAACCATGGATAAGTT
TAAAATGGTTTTCGAGACCAAATCGAGCAGGAGAATGTTTACCCTTGTTG
CATCATTTGTGGTCATTTTCCTAATTGTATACTATCTCACTAGGTAAATG
ATCTATGATGTATTTGATAACGCCAGCAGCTTTATGTTAGAATTGGGATG
ACCCCATTTTTATGTGGTTATGTAATCAATCTTACATGTTGCATGTAAGG
AACTCGTTTGTGGTTGTATAAAGAGTTTGTATTCTATGGAATTGTTATTA
AAAGCTTGAAACAAGATACTACATATTATTCAGCAAAAAAAAAAAAAAAA
AAAAAAAAAA
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