FC923328

Overview
NameFC923328
Unique NameFC923328
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923328_ssr24 microsatellite FC923328_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14439 contig Ccv1_Contig14439:1..523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923328 vs. ExPASy Swiss-Prot
Match: SAP2_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 2 OS=Arabidopsis thaliana GN=SAP2 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.032e-26
Identity = 56/102 (54.90%), Postives = 73/102 (71.57%), Query Frame = 2
Query:  212 MDHDETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESV 517
            MDHD+TGCQ+PPEGP LC NNCGFFGS ATMNMCSKC+KD++ +Q+Q    AS++      +SS+   E+  AA VD++  SVEP  +SVQPS    ++E V
Sbjct:    1 MDHDKTGCQSPPEGPKLCTNNCGFFGSAATMNMCSKCHKDMLFQQEQGAKFASAVSG--TSSSSNIIKETFTAALVDIETKSVEPMTVSVQPSSVQVVAEVV 100          
BLAST of FC923328 vs. ExPASy Swiss-Prot
Match: SAP8_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica GN=SAP8 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.001e-26
Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 2
Query:  212 MDHDETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESV 517
            M+H ETGCQ P EGPILCINNCGFFGS ATMNMCSKC+K++++KQ+QAKLAASSI SIVN     +G E + A   +V  + VE K +  QP+  +  SE V
Sbjct:    1 MEHKETGCQQP-EGPILCINNCGFFGSAATMNMCSKCHKEMIMKQEQAKLAASSIDSIVN--GGDSGKEPIIAGHAEVAVAQVEVKTLVAQPAEIAGPSEGV 99          
BLAST of FC923328 vs. ExPASy Swiss-Prot
Match: SAP8_ORYSI (Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. indica GN=SAP8 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.001e-26
Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 2
Query:  212 MDHDETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESV 517
            M+H ETGCQ P EGPILCINNCGFFGS ATMNMCSKC+K++++KQ+QAKLAASSI SIVN     +G E + A   +V  + VE K +  QP+  +  SE V
Sbjct:    1 MEHKETGCQQP-EGPILCINNCGFFGSAATMNMCSKCHKEMIMKQEQAKLAASSIDSIVN--GGDSGKEPIIAGHAEVAVAQVEVKTLVAQPAEIAGPSEGV 99          
BLAST of FC923328 vs. ExPASy Swiss-Prot
Match: SAP4_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Oryza sativa subsp. japonica GN=SAP4 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.334e-25
Identity = 57/102 (55.88%), Postives = 71/102 (69.61%), Query Frame = 2
Query:  212 MDHDETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESV 517
            M+H E GCQ P EGPILCINNCGFFGS ATMNMCSKC+K++++K++QAKLAASSI SIVN           A+ +  V  + VE K + VQP+  +  SE V
Sbjct:    1 MEHKEAGCQQP-EGPILCINNCGFFGSAATMNMCSKCHKEMIMKEEQAKLAASSIDSIVNGCDGGKEHIVAASGSTAVAVAQVEAKTLVVQPTDVAGTSEEV 101          
The following BLAST results are available for this feature:
BLAST of FC923328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SAP2_ARATH1.032e-2654.90Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP8_ORYSJ3.001e-2658.82Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP8_ORYSI3.001e-2658.82Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP4_ORYSJ4.334e-2555.88Zinc finger A20 and AN1 domain-containing stress-a... [more]
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Properties
Property NameValue
Genbank descriptionC31703G12EF StrClemenN Citrus clementina cDNA clone C31703G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923328 ID=FC923328; Name=FC923328; organism=Citrus clementina; type=EST; length=523bp
GGAAGCCTTTTTAAAAAAATCAAAGAGAGAGAGAGAGAGACACCCGGAAA
GGGAAACGAGGACGTCTCTAATCGGTTTTTGCCTGCTCTCTCCCCGTAGG
CCGATCTGGTCCATTTAATTTTAGGGGCTCATTGGATGCTGGCTTGAGCT
CGGGGATCGGCTTAAGGGATTCATTGCTGTTTCTTCTGTTGCTCGCAGGG
GTGGTGAAAACATGGACCATGATGAGACTGGATGCCAAGCTCCTCCTGAG
GGCCCTATCTTGTGCATCAACAATTGTGGTTTCTTTGGAAGTGTGGCTAC
TATGAATATGTGTTCCAAATGCTACAAGGATATAATGCTGAAACAGGATC
AAGCTAAGCTTGCTGCTTCATCTATTGGAAGCATTGTGAATGAAACGTCA
AGCAGCAATGGAAGTGAATCTGTTGCTGCTGCCACTGTTGATGTGCAAGC
TAGTTCAGTGGAGCCAAAAATCATCTCTGTGCAGCCATCATGTGCTTCAG
AATTGAGCGAGAGTGTGGAGGCA
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