FC923343

Overview
NameFC923343
Unique NameFC923343
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14443 contig Ccv1_Contig14443:1..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923343 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.146e-47
Identity = 97/172 (56.40%), Postives = 129/172 (75.00%), Query Frame = 1
Query:  133 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLHEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCG 648
            MVRGK QMK+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEV++IIFS KG+L+EF+SS MQ T++RY R+T++R   +   E  MQ LK+E ANM++KIE +E S+RKLLG+ +G+ +            +S++ IRARK Q+F EQ+ QLK+KE+ L  +N +L  K G
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWG 172          
BLAST of FC923343 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.369e-41
Identity = 90/175 (51.43%), Postives = 122/175 (69.71%), Query Frame = 1
Query:  133 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLHEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKP 657
            MVRGK QMK+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA+I+FS +G+L+EF+S+  QKT+ERY  YT+E  I    +++ ++Q+K +   + +K+E +E  +RKLLG+ L   +            RSL SIR RK +L  EQ+ +L+EKE  L +DN  L  KC  +P
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQKTIERYRTYTKE-NIGNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREKCKNQP 174          
BLAST of FC923343 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.198e-38
Identity = 89/172 (51.74%), Postives = 117/172 (68.02%), Query Frame = 1
Query:  133 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLHEF-SSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKC 645
            MVRGK +MK+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA+IIFS +G+L+EF SSS + KT+ERY +  ++   +    +   QQ K E   +  KIEH+E+S RK++G+ L + +            RSL  IRA+K QL  E+  +LKEKER L+ +N  L  KC
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNHKRNDN-SQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKC 171          
BLAST of FC923343 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.565e-38
Identity = 81/168 (48.21%), Postives = 123/168 (73.21%), Query Frame = 1
Query:  133 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLHEFSSS-EMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 633
            MVRG+ ++K+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA+I+FS +GRL+EF+S+  +QKT++RY  YT++  ++   +++ +QQ+K +   + +K+E ++ S+RK+LG++L   +            +SL  IR +K +L  +Q+ +LKEKER LL+DN  L
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKD-HVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENL 167          
BLAST of FC923343 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.044e-38
Identity = 81/168 (48.21%), Postives = 123/168 (73.21%), Query Frame = 1
Query:  133 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLHEFSSS-EMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 633
            MVRG+ ++K+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA+I+FS +GRL+EF+S+  +QKT++RY  YT++  ++   +++ +QQ+K +   + +K+E ++ S+RK+LG++L   +            +SL +IR +K +L   Q+ +LKEKER LL+DN  L
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKD-HVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENL 167          
BLAST of FC923343 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.499e-36
Identity = 85/168 (50.60%), Postives = 116/168 (69.05%), Query Frame = 1
Query:  133 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLHEFSSSEMQKTLERYYRYTEERQIDRNGMER-YMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 633
            MVRGK +MK+IEN TSRQVTFSKRRNG+LKKA+ELSVLCDAEVA++IFS + +L+EFSSS +  T+ERY R  +E  I  N       QQ + E + + +KIE +E+S+RKLLG+ + + +            RSL  IRA+K QL  E++ +LK +ER L+++N  L
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSSIAATIERYQRRIKE--IGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDL 166          
BLAST of FC923343 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.887e-34
Identity = 80/167 (47.90%), Postives = 107/167 (64.07%), Query Frame = 1
Query:  133 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLHEFSSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARL 633
            M RG++++K+IEN  +RQVTFSKRRNG+LKKAYELSVLCDAEVA+IIFS +G+L+EF S+ + KTLERY       Q   N +    Q   HE++ +  K E ++ +QR LLG+DLG  +             +L   R RK QL  EQ+ +L+ KER L E N +L
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNALSE-TQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQL 166          
BLAST of FC923343 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.586e-33
Identity = 81/183 (44.26%), Postives = 112/183 (61.20%), Query Frame = 1
Query:  133 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLHEF-SSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIKCGQKPWQQSTPR 678
            M RGK+ +++IEN  SRQVTF+KRRNG+LKKAYELS+LCDAEVA+++FS  GRL++F SSS M KTLERY RY    Q         MQ    E  N+   +E ++ SQR LLG+DL                R+L+ IR+RK Q+  +++  LK KE++L + N  L  K  +   + + P+
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEIDVEAAPPQ 183          
BLAST of FC923343 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.676e-32
Identity = 76/171 (44.44%), Postives = 110/171 (64.33%), Query Frame = 1
Query:  133 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLHEF-SSSEMQKTLERYYRYTEERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIK 642
            M RG++++K+IEN  +RQVTF+KRRNG+LKKAYELSVLCDAEVA+IIFS +G+L+EF SSS M KTL+RY + +       N   + ++    E   +  + E+++  QR LLG+DLG   +            SL+ +R+ K Q   +Q+  L+ KE++LLE N  L +K
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMK 171          
BLAST of FC923343 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.734e-32
Identity = 80/175 (45.71%), Postives = 111/175 (63.43%), Query Frame = 1
Query:  133 MVRGKIQMKKIENDTSRQVTFSKRRNGMLKKAYELSVLCDAEVAVIIFSQKGRLHEF-SSSEMQKTLERYYRYT----EERQIDRNGMERYMQQLKHEIANMIEKIEHIEVSQRKLLGQDLGSRTNXXXXXXXXXXXRSLRSIRARKAQLFNEQMGQLKEKERLLLEDNARLCIK 642
            M RG++++K+IEN  +RQVTF+KRRNG+LKKAYELSVLCDAEVA+I+FS +G+L+EF S+S M KTLERY R +    E  Q  +     Y + LK     +  K++ ++ S R LLG+DLG  +            +SLR IR+ K Q   +Q+  L++KE +L E N  L  K
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKETESSYQEYLK-----LKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTK 170          
The following BLAST results are available for this feature:
BLAST of FC923343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
SOC1_ARATH3.146e-4756.40MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MAD50_ORYSJ3.369e-4151.43MADS-box transcription factor 50 OS=Oryza sativa s... [more]
AGL14_ARATH1.198e-3851.74Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
MAD56_ORYSJ1.565e-3848.21MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD56_ORYSI2.044e-3848.21MADS-box transcription factor 56 OS=Oryza sativa s... [more]
AGL19_ARATH2.499e-3650.60Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
MADS6_ORYSJ8.887e-3447.90MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MAD34_ORYSJ2.586e-3344.26MADS-box transcription factor 34 OS=Oryza sativa s... [more]
SEP1_ARATH1.676e-3244.44Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
CMB1_DIACA3.734e-3245.71MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31704A07EF StrClemenN Citrus clementina cDNA clone C31704A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923343 ID=FC923343; Name=FC923343; organism=Citrus clementina; type=EST; length=686bp
CGGGGAGGGTTTCTTTCTTCTTGCCTCTCCATTTTTGTAGAATTTTCTGT
TTGGTTTCTGGGTTGAAATTTTTTTATCTAGAAAAATTTCTGCACGAAAA
TCTGTTGTCCGGGTACTTCCCAAATACTGGCCATGGTGAGGGGAAAAATT
CAGATGAAGAAAATAGAGAATGATACAAGCCGGCAAGTGACATTTTCAAA
GCGTCGAAATGGGATGTTGAAGAAGGCTTACGAGCTTTCGGTTCTTTGCG
ATGCTGAAGTTGCTGTTATTATCTTCTCACAGAAAGGAAGGCTCCATGAG
TTTTCAAGTTCTGAAATGCAAAAGACGTTAGAACGATACTATAGATACAC
AGAAGAAAGGCAAATTGACAGGAATGGAATGGAGCGATACATGCAGCAAT
TGAAGCATGAAATAGCGAATATGATTGAGAAGATCGAGCATATTGAAGTT
TCTCAACGGAAGCTTTTAGGACAGGACCTGGGTTCACGTACCAATGAGGA
ACTCCAAGAGCTTGATGACCAGCTAGAACGAAGCTTGCGCAGCATCCGAG
CAAGAAAGGCTCAGCTGTTCAATGAGCAGATGGGGCAACTTAAAGAAAAG
GAGAGACTTTTGCTGGAAGACAATGCCAGGTTATGTATAAAGTGTGGACA
AAAGCCATGGCAGCAATCGACCCCACGGAAAGAAGC
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