FC923346

Overview
NameFC923346
Unique NameFC923346
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14806 contig Ccv1_Contig14806:20..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: SYEP_DROME (Bifunctional aminoacyl-tRNA synthetase OS=Drosophila melanogaster GN=Aats-glupro PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 3.206e-56
Identity = 112/211 (53.08%), Postives = 143/211 (67.77%), Query Frame = 3
Query:   12 LAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFEN-EKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXY----KDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDNGAKVDLPRSSLVERIKELLDEIQESL 629
            LA+PV+KG+K+E EKFAGG YTTTVEAFI  +GR IQGATSH LGQNFSKMFEI++E+ E  +K   +QNSW  TTRTIGVM+MVH D++GLVL                    KD +   + DAC A  + L   G+    D RDNYSPGWK++HWE+KGVPLR+E+GPKDL   Q+ AVR D   K+ +P + + ++I  LL+ I ES+
Sbjct: 1402 LAIPVVKGRKTEKEKFAGGDYTTTVEAFISASGRAIQGATSHHLGQNFSKMFEIVYEDPETQQKKYVYQNSWGITTRTIGVMIMVHADNQGLVLPPHVACIQAIVVPCGITVNTKDDERAQLLDACKALEKRLVGGGVRCEGDYRDNYSPGWKFNHWELKGVPLRLEVGPKDLKAQQLVAVRRDTVEKITIPLADVEKKIPALLETIHESM 1612          
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: SYEP_HUMAN (Bifunctional aminoacyl-tRNA synthetase OS=Homo sapiens GN=EPRS PE=1 SV=5)

HSP 1 Score: 216.083 bits (549), Expect = 1.218e-55
Identity = 110/216 (50.93%), Postives = 141/216 (65.28%), Query Frame = 3
Query:    3 EEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEK--GEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDA----DTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDNGAKVDLPRSSLVERIKELLDEIQESLF 632
            EE LA+PV+KG+K+E EKFAGG YTTT+EAFI  +GR IQG TSH LGQNFSKMFEI+FE+ K  GEK  A+QNSW  TTRTIGVM MVHGD+ GLVL                 +A    D + +   C      L    I    D RDNYSPGWK++HWE+KGVP+R+E+GP+D+   Q  AVR D G K+ +  +    +++ +L++IQ +LF
Sbjct: 1198 EELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTLF 1413          
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: SYEP_MOUSE (Bifunctional aminoacyl-tRNA synthetase OS=Mus musculus GN=Eprs PE=2 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 1.031e-54
Identity = 110/216 (50.93%), Postives = 143/216 (66.20%), Query Frame = 3
Query:    3 EEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEK--GEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDA----DTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDNGAKVDLPRSSLVERIKELLDEIQESLF 632
            EE LA+PV++G+K+E EKFAGG YTTT+EAFI  +GR IQGATSH LGQNFSKM EI+FE+ K  GEK  A+Q SW  TTRTIGVMVMVHGD+ GLVL                 +A    D + +   C      L  A I   +D RDNYSPGWK++HWE+KGVP+R+E+GP+D+   Q  AVR D G K+ +       +++++L++IQ +LF
Sbjct: 1198 EELLAIPVVRGRKTEKEKFAGGDYTTTIEAFISASGRAIQGATSHHLGQNFSKMCEIVFEDPKTPGEKQFAYQCSWGLTTRTIGVMVMVHGDNMGLVLPPRVASVQVVVIPCGITNALSEEDREALMAKCNEYRRRLLGANIRVRVDLRDNYSPGWKFNHWELKGVPVRLEVGPRDMKSCQFVAVRRDTGEKLTIAEKEAEAKLEKVLEDIQLNLF 1413          
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: YHY6_SCHPO (Putative prolyl-tRNA synthetase C19C7.06 OS=Schizosaccharomyces pombe GN=SPBC19C7.06 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.317e-53
Identity = 113/221 (51.13%), Postives = 138/221 (62.44%), Query Frame = 3
Query:    6 EFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGE--------KAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXY----KDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDNGAKVDLPRSSLVERIKELLDEIQESLF 632
            + LAVPVIKG KSE EKFAGG++TTTVE +IP TGRGIQGATSHCLGQNFSKMF I+ E+   E        K   WQNSW  +TRTIGV VMVHGDDKGL L                     D +   I   C+   + L  A I    D R  Y+PG+K+SHWEMKGVPLR+E GP D  KNQV AVR D   K+ +P ++L + + +LL +IQ +++
Sbjct:  390 DLLAVPVIKGVKSENEKFAGGMFTTTVEGYIPTTGRGIQGATSHCLGQNFSKMFNIVVEDPNAEIGPTGERPKLFVWQNSWGLSTRTIGVAVMVHGDDKGLKLPPAIALVQSVVVPCGITNKTTDQERNEIEGFCSKLADRLNAADIRTEADLR-AYTPGYKFSHWEMKGVPLRLEYGPNDAKKNQVTAVRRDTFEKIPVPLNNLEKGVSDLLAKIQTNMY 609          
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: YHI0_YEAST (Putative prolyl-tRNA synthetase YHR020W OS=Saccharomyces cerevisiae GN=YHR020W PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.296e-51
Identity = 107/217 (49.31%), Postives = 137/217 (63.13%), Query Frame = 3
Query:    3 EEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGE---KAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXY----KDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDNGAKVDLPRSSLVERIKELLDEIQESLF 632
            EE LAVPV+KG+K+E EKFAGG +TTT E +IP TGRGIQGATSH LGQNFSKMF +  EN  G    K  A+QNSW  +TR IGVMVM+H D+KGLV+                     +   + I +   +    L + GI A  D  DNY+PGWK+S +E+KG+P+RIE+GPKD+ KNQV  VR ++  K  +    L  RI E+L+E+Q  LF
Sbjct:  369 EELLAVPVVKGRKTEKEKFAGGDFTTTCEGYIPQTGRGIQGATSHHLGQNFSKMFNLSVENPLGSDHPKIFAYQNSWGLSTRVIGVMVMIHSDNKGLVIPPRVSQFQSVVIPVGITKKTSEEQRKHIHETARSVESRLKKVGIRAFGDYNDNYTPGWKFSQYELKGIPIRIELGPKDIEKNQVVVVRRNDSKKYVVSFDELEARIPEILEEMQGDLF 585          
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: SYP_ENCCU (Prolyl-tRNA synthetase OS=Encephalitozoon cuniculi GN=ECU02_1360 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.308e-43
Identity = 88/214 (41.12%), Postives = 131/214 (61.21%), Query Frame = 3
Query:    6 EFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEK--AMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLC----EAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDNGAKVDLPRSSLVERIKELLDEIQESL 629
            E LAVPVIKG+KSE EKF G  YTT++EAFIP +GRG+Q ATSH LGQNFS+MF+I  + ++G +  +  +QNSW  TTR+IG+  M+H D+ GLVL                  A ++   ++  A +  +C     +G+  ++D R N + G+K++HWE++GVPLR+EIG KD+A ++   VR D  AK  +    +   + E +D +   +
Sbjct:  210 ELLAVPVIKGRKSENEKFGGADYTTSIEAFIPGSGRGVQAATSHSLGQNFSRMFDIKADTDEGSESSSFVYQNSWGITTRSIGIAAMIHSDNLGLVLPPRVAMTQVVIVPCGITTASSKDDTESLRAYINGVCVQLKNSGVRVHLDDRSNVTAGFKFNHWEIRGVPLRLEIGFKDMASSEACLVRRDTRAKKQVSVEGIAHTVMEEIDTMHNDM 423          
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: SYP_GRAFK (Prolyl-tRNA synthetase OS=Gramella forsetii (strain KT0803) GN=proS PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.001e-41
Identity = 85/210 (40.48%), Postives = 121/210 (57.62%), Query Frame = 3
Query:    3 EEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDNGAKVDLPRSSLVERIKELLDEIQESLF 632
            E F+A+PV+KG K+E E+FAG L T  +EA + + G+ +Q  TSH LGQNF++ F++ F  ++G     W  SW  +TR +G ++M H DD GLVL                 +     I +     V+ L   G+    D+ DN  PGWK++ +E++GVPLR+ IGPKDL K  V   R D   K  + RS +VE+IK L+ EIQ+SLF
Sbjct:  200 ENFMAMPVVKGSKTESERFAGALETYCIEALMQD-GKALQAGTSHFLGQNFAEAFDVKFATKEGGLEHVWATSWGVSTRLMGALIMTHSDDNGLVLPPNLAPIQVVIVPIYRSEEQLDQISEVANELVKELRAVGVSVKFDNNDNQKPGWKFAQYELQGVPLRLAIGPKDLEKGTVELARRDTLTKEFVNRSEVVEKIKALMTEIQDSLF 408          
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: SYP_AMOA5 (Prolyl-tRNA synthetase OS=Amoebophilus asiaticus (strain 5a2) GN=proS PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.968e-41
Identity = 82/210 (39.05%), Postives = 119/210 (56.67%), Query Frame = 3
Query:    3 EEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDNGAKVDLPRSSLVERIKELLDEIQESLF 632
            +++LA+P +KG K+E E+FAG   T T+EA + + G+ +Q  TSH LGQ F+K FE+ F N+ G+    W  SW  TTR IG +VM H DDKGLVL                   + + I        + L    I A +D RD + PGWK++ +E+KGVP+R+ IGP DLA N V   R D   K  +P  +++  +K +LD I ++L+
Sbjct:  199 KDYLAIPFLKGIKTEHERFAGAEETYTIEALMQD-GKALQAGTSHFLGQRFAKAFEVTFTNQAGQLDYVWGTSWGLTTRLIGALVMTHSDDKGLVLPPRVAPIQIVIIPIYRTQEEKEAIQQQAQHIQQQLIAHNISAKLDGRDEHKPGWKFAEYELKGVPIRMAIGPNDLANNTVELTRRDTSEKTTVPTDNIIVVVKSMLDSIHDNLY 407          
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: SYP_SALRD (Prolyl-tRNA synthetase OS=Salinibacter ruber (strain DSM 13855) GN=proS PE=3 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 8.475e-41
Identity = 81/209 (38.76%), Postives = 120/209 (57.42%), Query Frame = 3
Query:    3 EEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDNGAKVDLPRSSLVERIKELLDEIQESL 629
            EE++A+PV++G+K+E E+F G + T  +EA + + G+ +Q  TSH LGQNF+K F+  F NE  E+   W  SW  +TR IG ++M H DD+GLVL               + D     + + C    E L + GI   MD     SPGW++S  E++GVPLR+ IGP+DL  + V   R D   K  +P+  + ER+ + LD+IQ +L
Sbjct:  198 EEYMAMPVLQGRKTESERFPGAVDTYCIEAMMQD-GKALQAGTSHFLGQNFAKAFDCTFTNEDNEEEYVWATSWGVSTRLIGGLIMTHSDDQGLVLPPKLAPHQVVIVPLFFDDDQEGPVMETCERLQERLEDHGIRVKMDQNHTQSPGWRFSEHELRGVPLRLAIGPRDLENDNVEMARRDTQEKEVVPQDGIAERVSDTLDDIQHAL 405          
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: SYP2_CLOD6 (Prolyl-tRNA synthetase 2 OS=Clostridium difficile (strain 630) GN=proS2 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.475e-41
Identity = 86/210 (40.95%), Postives = 120/210 (57.14%), Query Frame = 3
Query:    3 EEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDNGAKVDLPRSSLVERIKELLDEIQESLF 632
            EE LA+PV+ G+KSE EKFAGG  T T+EA + + G+ +Q  TSH LGQ+F+K F+I F + +G  A  +  SW  +TR IG ++M H D++GLVL                K  +     D   A ++     G+   +D RDNY+ GWK++ WEMKGVP+R+EIGPKD+  NQ    R D   K  +P   L + I +L D I   +F
Sbjct:  192 EELLAMPVVAGQKSESEKFAGGERTYTIEAMM-HDGKALQSGTSHFLGQHFTKAFDITFADREGNLANPYHTSWGASTRLIGGLIMTHSDNRGLVLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLKA---KGVAVEVDDRDNYTTGWKFNEWEMKGVPVRVEIGPKDIENNQAMVFRRDTLEKDSMPLEGLADAICDLFDVIHNDMF 397          
The following BLAST results are available for this feature:
BLAST of FC923346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
SYEP_DROME3.206e-5653.08Bifunctional aminoacyl-tRNA synthetase OS=Drosophi... [more]
SYEP_HUMAN1.218e-5550.93Bifunctional aminoacyl-tRNA synthetase OS=Homo sap... [more]
SYEP_MOUSE1.031e-5450.93Bifunctional aminoacyl-tRNA synthetase OS=Mus musc... [more]
YHY6_SCHPO3.317e-5351.13Putative prolyl-tRNA synthetase C19C7.06 OS=Schizo... [more]
YHI0_YEAST5.296e-5149.31Putative prolyl-tRNA synthetase YHR020W OS=Sacchar... [more]
SYP_ENCCU5.308e-4341.12Prolyl-tRNA synthetase OS=Encephalitozoon cuniculi... [more]
SYP_GRAFK1.001e-4140.48Prolyl-tRNA synthetase OS=Gramella forsetii (strai... [more]
SYP_AMOA54.968e-4139.05Prolyl-tRNA synthetase OS=Amoebophilus asiaticus (... [more]
SYP_SALRD8.475e-4138.76Prolyl-tRNA synthetase OS=Salinibacter ruber (stra... [more]
SYP2_CLOD68.475e-4140.95Prolyl-tRNA synthetase 2 OS=Clostridium difficile ... [more]

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Properties
Property NameValue
Genbank descriptionC31704A10EF StrClemenN Citrus clementina cDNA clone C31704A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923346 ID=FC923346; Name=FC923346; organism=Citrus clementina; type=EST; length=636bp
ATGAAGAATTCTTGGCTGTTCCTGTTATAAAGGGTAAGAAGAGTGAGCTA
GAAAAGTTTGCTGGTGGGCTTTACACAACGACCGTTGAGGCATTTATTCC
GAACACTGGTCGTGGTATACAAGGTGCAACTTCTCATTGTTTGGGCCAAA
ACTTTTCAAAAATGTTTGAGATAATTTTTGAAAATGAGAAGGGAGAGAAG
GCTATGGCCTGGCAGAATTCTTGGGCCTACACTACCCGAACAATTGGGGT
TATGGTGATGGTCCATGGGGATGACAAAGGCTTGGTGCTGCCACCTAGAG
TTGCATCTGTGCAAGTGATTGTTGTTCCTGTGCCTTACAAAGATGCTGAT
ACTCAAGGAATTTTTGATGCCTGCACTGCAACTGTAGAAACATTGTGTGA
GGCAGGTATTTGTGCTAATATGGACTCAAGAGACAACTACTCACCTGGAT
GGAAGTACTCACACTGGGAAATGAAAGGTGTTCCCCTTAGGATTGAAATA
GGACCAAAAGACTTGGCAAAAAATCAGGTACGTGCTGTTCGCTGTGACAA
TGGAGCAAAAGTTGATCTGCCTAGGAGCTCTTTGGTTGAGCGAATAAAAG
AACTTCTTGATGAGATTCAAGAAAGCTTGTTTGTTG
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