FC923357

Overview
NameFC923357
Unique NameFC923357
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13956 contig Ccv1_Contig13956:117..505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923357 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.831e-33
Identity = 73/105 (69.52%), Postives = 77/105 (73.33%), Query Frame = 1
Query:   73 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGIL 387
            MPIRNIA+G P EAT PDAL+AALAEFISTLIFV AG GSGMAFNKLT NGA TPS                     NISGGHVNPAVTFGAF+GGNI+LLRGIL
Sbjct:    1 MPIRNIAIGRPDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGIL 105          
BLAST of FC923357 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.892e-32
Identity = 69/105 (65.71%), Postives = 78/105 (74.29%), Query Frame = 1
Query:   73 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGIL 387
            MPIRNIAVG P+EATHPD L+A LAEFIST IFVFAG GSG+A+NKLT++GA TP+                     NISGGHVNPAVTFGAFVGGNI+LLRGI+
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIV 105          
BLAST of FC923357 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.233e-30
Identity = 68/105 (64.76%), Postives = 75/105 (71.43%), Query Frame = 1
Query:   73 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGIL 387
            MPIRNIAVG  +E  HP AL+AALAEFISTLIFVFAG+GSGMAF+KLT  GA TP+                     NISGGHVNPAVTFGAFVGGNI+L RG+L
Sbjct:    1 MPIRNIAVGSHQEVYHPGALKAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLL 105          
BLAST of FC923357 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 5.514e-30
Identity = 68/105 (64.76%), Postives = 77/105 (73.33%), Query Frame = 1
Query:   73 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGIL 387
            MPIRNIAVG P+EATHPD L+A LAEFIST IFVFAG GSG+A+NKLT++GA TP+                     NISGGHVNPAV FGAFVGGNI+LLRGI+
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIV 104          
BLAST of FC923357 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.040e-28
Identity = 67/106 (63.21%), Postives = 74/106 (69.81%), Query Frame = 1
Query:   73 MPIRNIAVGHPREAT-HPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGIL 387
            MP RNIA+G  +E   HP+ALRAALAEFISTLIFVFAG GSG+AFNK+T NGA TPS                     NISGGHVNPAVTFG  +GGNI+LLRGIL
Sbjct:    1 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGIL 106          
BLAST of FC923357 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.161e-28
Identity = 63/105 (60.00%), Postives = 72/105 (68.57%), Query Frame = 1
Query:   73 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGIL 387
            MP+  IAVG P E +HPD  +AA+AEFISTLIFVFAG GSGMAF+KLT  GA TP+                     NISGGHVNPAVTFGAFVGGNISLL+ ++
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALV 105          
BLAST of FC923357 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.502e-27
Identity = 63/105 (60.00%), Postives = 71/105 (67.62%), Query Frame = 1
Query:   73 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGIL 387
            MPI  IA+G  +E  HP AL+AA AEFISTLIFVFAG+GSGMAF+KLT  G  TP+                     NISGGHVNPAVTFGAFVGGNI+L RG+L
Sbjct:    1 MPINRIALGSHQEVYHPGALKAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLL 105          
BLAST of FC923357 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.345e-27
Identity = 61/105 (58.10%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   73 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGIL 387
            MP+  IAVG P E +HPD  +AA+AEFIS LIFVFAG GSGMAF+KLT  G  TPS                     NISGGHVNPAVTFGAFVGGNISL++ ++
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVV 105          
BLAST of FC923357 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.453e-27
Identity = 60/105 (57.14%), Postives = 71/105 (67.62%), Query Frame = 1
Query:   73 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGIL 387
            MPI  IA+G P EA+ PDA+RAA AEF S +IFVFAG+GSGMA+ KLT +G  TP+                     N+SGGHVNPAVTFGAF+GGNI+LLR IL
Sbjct:    1 MPINRIAIGTPGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAIL 105          
BLAST of FC923357 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.033e-20
Identity = 51/106 (48.11%), Postives = 61/106 (57.55%), Query Frame = 1
Query:   82 RNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKL-----THNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGI 384
            R    G   EATHPD++RA LAEF+ST +FVFAGEGS +A +KL      H G NTP                      N+SGGHVNPAVTF A +GG IS++R I
Sbjct:    7 RAYGFGRADEATHPDSIRATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAI 112          
The following BLAST results are available for this feature:
BLAST of FC923357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
TIP11_ARATH1.831e-3369.52Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP1_MEDTR5.892e-3265.71Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP11_ORYSJ3.233e-3064.76Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP1_MEDSA5.514e-3064.76Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP12_ARATH1.040e-2863.21Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP12_MAIZE5.161e-2860.00Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP11_MAIZE1.502e-2760.00Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP12_ORYSJ3.345e-2758.10Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP13_ARATH7.453e-2757.14Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP32_ARATH3.033e-2048.11Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31704B09EF StrClemenN Citrus clementina cDNA clone C31704B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923357 ID=FC923357; Name=FC923357; organism=Citrus clementina; type=EST; length=389bp
AGACCAGTACACTTACGTGAACCAGTAGTAATCACACCCCAAAGGTTCAA
TCTTCATCGTTTGATCTCCATCATGCCGATCAGAAACATTGCCGTTGGCC
ATCCCCGTGAGGCGACTCATCCAGATGCCCTAAGGGCAGCCCTAGCAGAG
TTCATCTCAACTCTAATATTTGTCTTTGCCGGTGAAGGCTCGGGCATGGC
CTTCAACAAGCTCACTCACAACGGCGCCAACACCCCCTCCGGCCTCGTCG
CCGCCTCTGTTGCTCACGCTTTCGCCCTTTTCGTTGCTGTCGCCGTTGGC
GCCAACATTTCCGGTGGCCACGTTAATCCTGCTGTCACCTTTGGCGCCTT
CGTTGGAGGTAACATCTCCCTTCTACGAGGCATCCTCTC
back to top