FC923360

Overview
NameFC923360
Unique NameFC923360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14323 contig Ccv1_Contig14323:3..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923360 vs. ExPASy Swiss-Prot
Match: GOS11_ARATH (Golgi SNARE 11 protein OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.806e-67
Identity = 131/156 (83.97%), Postives = 141/156 (90.38%), Query Frame = 1
Query:  205 MDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESGVDWLLRQLQQVNIQMQDWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHATINRSTGQMDSVISQ 672
            MDVPSSWDALRKQARK+EAQLDEQMHSYR+LVS+K  +K D  E+DLE+G+D LLRQLQQVN QMQ WVSSGGSEMVSHTLTRHQEILQDLTQEFYR RSSL+AKQEHASLLEDFREFDRTRLDLEDG GS EQAL+KEH  INR+T QMD VISQ
Sbjct:    1 MDVPSSWDALRKQARKIEAQLDEQMHSYRRLVSTKALSKSDGNESDLEAGIDLLLRQLQQVNAQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRHRSSLRAKQEHASLLEDFREFDRTRLDLEDGYGS-EQALIKEHMGINRNTAQMDGVISQ 155          
BLAST of FC923360 vs. ExPASy Swiss-Prot
Match: GOS12_ARATH (Golgi SNARE 12 protein OS=Arabidopsis thaliana GN=GOS12 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.096e-15
Identity = 62/190 (32.63%), Postives = 99/190 (52.11%), Query Frame = 1
Query:  199 SAMDVPSS-WDALRKQARKLEAQLDEQMHSYRKLVS--SKGSTKVDAAENDLESGVDW---------LLRQLQQVNIQMQDWVSSGG-SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHATINRSTGQMDSVISQLKHSRCSGLSRSHLGASIQ 729
            S++D+  S W+ LR++ARK+E  LD ++ SY KL +  ++G   VD     + SG  W         LL +L  +N  M    +S   +  V+  L RH++IL + TQEF R++ ++ + +EHA LL   R  D        G  SP   +L+E A+I+ S   +D VI Q + +R    S+  L + +Q
Sbjct:    4 SSLDLQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQGGY-VDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDSMSRCAASAAPTTSVTQKLARHRDILHEYTQEFRRIKGNINSLREHAELLSSVR--DDISEYKASGSMSPGVQVLRERASIHGSISHIDDVIGQAQATRAVLGSQRSLFSDVQ 190          
BLAST of FC923360 vs. ExPASy Swiss-Prot
Match: GOSR1_HUMAN (Golgi SNAP receptor complex member 1 OS=Homo sapiens GN=GOSR1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 54/182 (29.67%), Postives = 86/182 (47.25%), Query Frame = 1
Query:  202 AMDVPSSWDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESG---------------------VDWLLRQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVIS 669
            A    S W+ LRKQAR+LE +LD ++ S+ KL +S   +       D  S                      ++ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS
Sbjct:    2 AAGTSSYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETIS 182          
BLAST of FC923360 vs. ExPASy Swiss-Prot
Match: GOSR1_BOVIN (Golgi SNAP receptor complex member 1 OS=Bos taurus GN=GOSR1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 56/196 (28.57%), Postives = 94/196 (47.96%), Query Frame = 1
Query:  223 WDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESG---------------------VDWLLRQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVISQLKHSRCSGLSRSHLGASIQA 732
            W+ LRKQAR+LE +LD ++ S+ KL +S   +       D  S                      ++ LL +L  +N +M ++ SS G    +  + HTL RH++ILQD T EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS    ++ +  S+  +  SIQ+
Sbjct:    9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGRRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGINDKMAEYTSSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFVAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIQS 203          
BLAST of FC923360 vs. ExPASy Swiss-Prot
Match: GOSR1_CRIGR (Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 52/175 (29.71%), Postives = 84/175 (48.00%), Query Frame = 1
Query:  223 WDALRKQARKLEAQLDEQMHSYRKLVSSKGSTKVDAAENDLESG---------------------VDWLLRQLQQVNIQMQDWVSSGG----SEMVSHTLTRHQEILQDLTQEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQAL-LKEHATINRSTGQMDSVIS 669
            W+ LRKQAR+LE +LD ++ S+ KL +S   +       D  S                      ++ LL +L  VN +M ++ +S G    +  + HTL RH++ILQD T EF++ +++  A +E  +L+   R+ D        GV +    L LKEH  +  S   ++  IS
Sbjct:    9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRK-DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETIS 182          
The following BLAST results are available for this feature:
BLAST of FC923360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GOS11_ARATH1.806e-6783.97Golgi SNARE 11 protein OS=Arabidopsis thaliana GN=... [more]
GOS12_ARATH2.096e-1532.63Golgi SNARE 12 protein OS=Arabidopsis thaliana GN=... [more]
GOSR1_HUMAN1.836e-1129.67Golgi SNAP receptor complex member 1 OS=Homo sapie... [more]
GOSR1_BOVIN1.836e-1128.57Golgi SNAP receptor complex member 1 OS=Bos taurus... [more]
GOSR1_CRIGR6.977e-1129.71Golgi SNAP receptor complex member 1 OS=Cricetulus... [more]
back to top
Properties
Property NameValue
Genbank descriptionC31704B12EF StrClemenN Citrus clementina cDNA clone C31704B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923360 ID=FC923360; Name=FC923360; organism=Citrus clementina; type=EST; length=732bp
AAAATTTAAAAAATTCAAAATTGACCAGTTTTTGGTCATTTTGCCGGTGT
GAGCAGACAATCTGTCCTCGTCTCTAAACAAACGTTATTATATTTAATCA
ACCAACGTATACGAAAGAAATTGAATAAAATCACGCAATTGAATTGAAGA
TCAATTTTTAATTTCATTTTTGGTTGACAGATCGATCTGGATTTGGTTTC
AGCGATGGATGTGCCTAGCTCATGGGACGCTTTACGCAAACAGGCGAGAA
AGCTGGAAGCACAGTTGGATGAGCAGATGCATTCCTATCGTAAGTTGGTT
TCCTCTAAGGGTTCTACAAAGGTTGACGCCGCAGAGAATGATCTTGAATC
TGGGGTAGATTGGTTGCTGAGACAGCTACAACAAGTAAATATACAAATGC
AAGATTGGGTATCGTCAGGAGGATCCGAAATGGTTTCACATACTTTGACT
CGTCATCAGGAAATTCTTCAAGATCTTACTCAGGAGTTTTATCGTCTCCG
CTCCAGCCTTAAAGCTAAGCAAGAGCATGCTTCGCTACTTGAGGACTTTA
GGGAGTTTGATCGGACCAGATTAGATTTAGAAGATGGTGTTGGTTCTCCA
GAGCAAGCTTTACTTAAAGAACACGCGACTATTAATCGAAGTACAGGACA
GATGGATTCTGTGATTTCTCAGCTCAAGCACTCTCGGTGCTCTGGCCTTT
CACGTTCACATTTGGGGGCATCAATTCAAGCT
back to top