FC923366

Overview
NameFC923366
Unique NameFC923366
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14253 contig Ccv1_Contig14253:1..642. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923366 vs. ExPASy Swiss-Prot
Match: TSSC1_DANRE (Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.826e-21
Identity = 67/209 (32.06%), Postives = 109/209 (52.15%), Query Frame = 2
Query:   74 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLWLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGES---YGAAIWQIPELY---------GQLNSPQ-LERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLR 640
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S  P D+ + +T ++ T ES     AA+W++P  +            N+PQ LE +  LD  AH G + CVLW   G   +++S+ E ++ LW L  S+  A + S    +  G L + + G W P H+   +A   +++++ WDLR
Sbjct:    9 YGLEFQARALTAQTAETDAIRFLVGTQSLKFDNQIHIIDFDDENNMINKSVLLHDAGEIWHISGSPADKAVLTTCYNKTSESRVLTCAAVWRMPPEWESGNHESPDDSSNNPQTLELLCHLDNSAH-GSMACVLWEPMGDGKRVISLAENHVLLWDLQESSAKATISSSATLEGKGQLKF-TAGKWSPHHNCTQLATANDTAIRGWDLR 215          
BLAST of FC923366 vs. ExPASy Swiss-Prot
Match: TSSC1_DICDI (Protein tssc1 homolog OS=Dictyostelium discoideum GN=tssc1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.609e-21
Identity = 64/212 (30.19%), Postives = 107/212 (50.47%), Query Frame = 2
Query:   74 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLWLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFST----------------------GESYGAAIWQIPELYGQLNSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS-LDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLR 640
            YGL  + R +S + A+ D   FL GT +L+EENE+ LL  +  G  + C  +F HP EI  ++SCPFD  +F +V++T                         + +++W+I E     +   +E +  L  H G I  +L   SG ++ ++S+D+ NI LWS +D  N+   +   +  G L  LS G+ +P+  N +A   + +++ WD R
Sbjct:   14 YGLSQKTRALSHITAEADVNRFLVGTTALREENEIALL-EAKEGEGVRCLSIFPHPKEIHSITSCPFDSSLFFSVYNTSGGGNNNSNNTNNNDNTNNNTNNNDFKSSLWRINE-----SMDSIEELFELKGHTGIIKPILCDPSGSNNFIISLDDSNIRLWSKIDDQNEPTVI---KQFGNLSKLSVGSINPNISNQLATANDVNIKGWDFR 216          
BLAST of FC923366 vs. ExPASy Swiss-Prot
Match: TSSC1_XENTR (Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.777e-20
Identity = 65/209 (31.10%), Postives = 106/209 (50.72%), Query Frame = 2
Query:   74 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLWLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESYG----AAIWQIP-ELYG---------QLNSPQLERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLR 640
            YGL++QAR ++   A+TD   FL GT SL+ +N++H++        +    L  H  EIW +S+ P D+ + +T ++          AA+W+IP EL G           N+  LE +  LD  AH G + CV W   G   KL+S+ +  + +W L  S+  + + S    +  G L + S G W P H+   VA   +++++ WD+R
Sbjct:    9 YGLEFQARALAAQTAETDAIRFLVGTQSLRYDNQIHVIDFDDENNIINKNILLHHAGEIWQISASPADRNVLATCYNKISDSKVLTCAAVWRIPKELQGGNHESPDDTSSNAQALELLCHLDNTAH-GNMACVTWEPLGDGKKLLSLADNYLMIWDLQESSTKSVLSSSVTLEGKGQLRFTS-GKWSPHHNCTQVATANDTAIRGWDIR 215          
BLAST of FC923366 vs. ExPASy Swiss-Prot
Match: TSSC1_RAT (Protein TSSC1 OS=Rattus norvegicus GN=Tssc1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.932e-20
Identity = 65/208 (31.25%), Postives = 107/208 (51.44%), Query Frame = 2
Query:   74 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLWLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGES---YGAAIWQIPELY--GQLNSPQ--------LERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLR 640
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP+        LE +  LD    G + CV+W   G   K++S+ + +I LW L  S+  A + S    +  G L + S G W P H+   VA   +++++ WD R
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADKGVLATCYNKTSDSRVQACAAVWRMPKELESGSHESPEDPASTAQTLELLCHLDNGAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSAALEGRGQLKFTS-GRWSPHHNCTQVATASDTTLRGWDTR 215          
BLAST of FC923366 vs. ExPASy Swiss-Prot
Match: TSSC1_XENLA (Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.442e-20
Identity = 64/209 (30.62%), Postives = 106/209 (50.72%), Query Frame = 2
Query:   74 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLWLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS----TGESYGAAIWQIP-ELYG---------QLNSPQLERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLR 640
            YGL++QAR ++   A+TD   FL GT SL+ +N++H++        +    L  H  EIW + + P D+ + +T ++    +     AA+W+IP EL G           N+  LE +  LD  AH G + CV W   G   KL+S+ +  + +W L  S+  + + S    +  G L + S G W P H+   VA   +++++ WD+R
Sbjct:    9 YGLEFQARALTAQTAETDAIRFLVGTQSLRYDNQIHVIDFDDENNIINKNVLLHHAGEIWQIGASPADRNVLATCYNKISDSKVMTCAAVWRIPKELQGGNHESPDDTSSNAQSLELLCHLDSTAH-GNMACVTWEPLGDGKKLLSLADNYLLIWDLQESSTKSVLSSSATLEGKGQLRFTS-GKWSPHHNCTQVATANDTAIRGWDIR 215          
BLAST of FC923366 vs. ExPASy Swiss-Prot
Match: TSSC1_HUMAN (Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.442e-20
Identity = 68/209 (32.54%), Postives = 108/209 (51.67%), Query Frame = 2
Query:   74 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLWLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGES---YGAAIWQIPELY--GQLNSPQ--------LERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLR 640
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP         LE +  LD  AH G + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L + S G W P H+   VA   +++++ WD R
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADRGVLTTCYNRTSDSKVLTCAAVWRMPKELESGSHESPDDSSSTAQTLELLCHLDNTAH-GNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLEGKGQLKFTS-GRWSPHHNCTQVATANDTTLRGWDTR 215          
BLAST of FC923366 vs. ExPASy Swiss-Prot
Match: TSSC1_MOUSE (Protein TSSC1 OS=Mus musculus GN=Tssc1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.874e-19
Identity = 64/208 (30.77%), Postives = 107/208 (51.44%), Query Frame = 2
Query:   74 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLWLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGES---YGAAIWQIPELY--GQLNSPQ--------LERIAALD-AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLR 640
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP         LE +  LD +  G + CV+W   G   K++S+ + +I LW L  S+  A + S    +  G L + + G W P H+   VA   +++++ WD R
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADKGVLATCYNKTTDSRVQACAAVWRMPKELESGSHESPDDPASTAQTLELLCHLDNSAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSATLEGRGQLKF-TAGRWSPHHNCTQVATASDTTLRGWDTR 215          
BLAST of FC923366 vs. ExPASy Swiss-Prot
Match: TSSC1_GECJA (Protein TSSC1 OS=Gecko japonicus GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.448e-19
Identity = 65/209 (31.10%), Postives = 107/209 (51.20%), Query Frame = 2
Query:   74 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLWLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGES---YGAAIWQIPELY----------GQLNSPQLERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLR 640
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T +S T +S     AA+W++P+               N+  LE +  LD  AH G +  VLW   G   KL+S+ + ++ LW L  S+  A + +    +  G L + S G W P H+   VA   +++++ WD+R
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQVGEIWHISASPADKGVLATCYSKTSDSKVMTCAAVWRMPKELESGSHESPDDSSSNAQTLELLCHLDNTAH-GNMAGVLWEPMGDGKKLISLADNHLLLWDLQESSSKAVLSNSAALEGKGQLKFTS-GRWSPHHNCTQVATANDTAIRGWDIR 215          
BLAST of FC923366 vs. ExPASy Swiss-Prot
Match: TSSC1_MACFA (Protein TSSC1 OS=Macaca fascicularis GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.197e-19
Identity = 67/209 (32.06%), Postives = 107/209 (51.20%), Query Frame = 2
Query:   74 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLWLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-TGES---YGAAIWQIPELY--GQLNSPQ--------LERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLR 640
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T ++ T +S     AA+W++P+    G   SP         LE +  LD  AH   + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L + S G W P H+   VA   +++++ WD R
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADRGVLATCYNRTSDSKVLTCAAVWRMPKELESGSHESPDDSSSTAQTLELLCHLDNTAH-SNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLGGKGQLKFTS-GRWSPHHNCTQVATANDTTLRGWDTR 215          
BLAST of FC923366 vs. ExPASy Swiss-Prot
Match: TSSC1_PONAB (Protein TSSC1 OS=Pongo abelii GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.291e-17
Identity = 68/236 (28.81%), Postives = 110/236 (46.61%), Query Frame = 2
Query:   74 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLWLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFS-------TGESYG------------------------AAIWQIPELY--GQLNSPQ--------LERIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGMLHYLSGGAWDP-HDVNAVAATCESSVQFWDLR 640
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T ++       + +S+G                        AA+W++P+    G   SP         LE +  LD  AH G + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L + S G W P H+   VA   +++++ WD R
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQVGEIWHISASPADRGVLATCYNRTFCCVLSLDSFGALGKSSAQLFIALATSSDSKVLTCAAVWRMPKELESGSHESPDDSSSTAQTLELLCHLDNTAH-GNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLEGKGQLKFTS-GRWSPHHNCTQVATANDTTLRGWDTR 242          
The following BLAST results are available for this feature:
BLAST of FC923366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TSSC1_DANRE5.826e-2132.06Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1[more]
TSSC1_DICDI7.609e-2130.19Protein tssc1 homolog OS=Dictyostelium discoideum ... [more]
TSSC1_XENTR3.777e-2031.10Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 ... [more]
TSSC1_RAT4.932e-2031.25Protein TSSC1 OS=Rattus norvegicus GN=Tssc1 PE=2 S... [more]
TSSC1_XENLA6.442e-2030.62Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1[more]
TSSC1_HUMAN6.442e-2032.54Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=1 SV=2[more]
TSSC1_MOUSE1.874e-1930.77Protein TSSC1 OS=Mus musculus GN=Tssc1 PE=1 SV=1[more]
TSSC1_GECJA2.448e-1931.10Protein TSSC1 OS=Gecko japonicus GN=TSSC1 PE=2 SV=... [more]
TSSC1_MACFA3.197e-1932.06Protein TSSC1 OS=Macaca fascicularis GN=TSSC1 PE=2... [more]
TSSC1_PONAB2.291e-1728.81Protein TSSC1 OS=Pongo abelii GN=TSSC1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC31704C06EF StrClemenN Citrus clementina cDNA clone C31704C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923366 ID=FC923366; Name=FC923366; organism=Citrus clementina; type=EST; length=642bp
GGATGACTAAACTCCGAGTTTCGTTGAATCGAATCGAAGTGCAACAATGC
AAGGAGGATCTTCAGGCATAGGCTATGGTCTCAAGTATCAAGCTAGATGC
ATATCAGATGTCAAAGCAGACACGGATCACACCAGCTTCCTCACTGGAAC
TCTCAGCCTCAAAGAAGAGAACGAGGTGCATTTGCTTTGGCTTTCATCCG
GTGGAACCGAGCTCATTTGCGAGGGTTTGTTCTCGCATCCTAACGAAATA
TGGGACCTCAGTTCGTGTCCGTTCGATCAACGGATTTTCTCCACTGTTTT
TTCCACTGGTGAGTCATATGGGGCAGCAATATGGCAAATTCCAGAGTTGT
ATGGCCAGCTAAATTCACCTCAGTTGGAACGTATCGCCGCTCTTGATGCA
CATGTTGGTAAGATTAATTGCGTTCTTTGGTGGTCATCTGGAAGACATGA
TAAATTGGTCAGCATAGACGAGGAAAATATTTTCTTGTGGAGCCTAGATT
GTTCAAACAAGAATGCCCAGGTACAATCTAAACAGTCATCTGGTATGCTG
CATTATTTATCTGGTGGAGCATGGGATCCGCATGATGTAAATGCTGTCGC
AGCGACTTGTGAATCATCAGTCCAGTTTTGGGATCTCAGATC
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