FC923375

Overview
NameFC923375
Unique NameFC923375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923375_ssr83 microsatellite FC923375_ssr83:83..126. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC923375 vs. ExPASy Swiss-Prot
Match: CAPZB_ARATH (Probable F-actin-capping protein subunit beta OS=Arabidopsis thaliana GN=At1g71790 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 3.762e-39
Identity = 78/109 (71.56%), Postives = 85/109 (77.98%), Query Frame = 3
Query:  135 MEAAMGLMRRMPPKHSETXXXXXXXXXXXXXXXXXXQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYEG 461
            MEAA+GL+RRMPPK SET                  QVD PLQVL D ESGK+FILCEYNRDADSYRSPWSNKY PPLEDALYP +ELRKLE+EAN++FAIYRDQYYEG
Sbjct:    1 MEAALGLLRRMPPKQSETALSALLSLIPQHSSDLLSQVDLPLQVLRDIESGKDFILCEYNRDADSYRSPWSNKYLPPLEDALYPSSELRKLEVEANDIFAIYRDQYYEG 109          
BLAST of FC923375 vs. ExPASy Swiss-Prot
Match: CAPZB_RAT (F-actin-capping protein subunit beta OS=Rattus norvegicus GN=Capzb PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.483e-27
Identity = 56/112 (50.00%), Postives = 72/112 (64.29%), Query Frame = 3
Query:  126 DKKMEAAMGLMRRMPPKHSETXXXXXXXXXXXXXXXXXXQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYEG 461
            D++++ A+ LMRR+PP+  E                    VDQPL++  D+  GK+++LC+YNRD DSYRSPWSNKY PPLED   P A LRKLE+EAN  F  YRD Y+EG
Sbjct:    3 DQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEG 114          
BLAST of FC923375 vs. ExPASy Swiss-Prot
Match: CAPZB_PONAB (F-actin-capping protein subunit beta OS=Pongo abelii GN=CAPZB PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.483e-27
Identity = 56/112 (50.00%), Postives = 72/112 (64.29%), Query Frame = 3
Query:  126 DKKMEAAMGLMRRMPPKHSETXXXXXXXXXXXXXXXXXXQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYEG 461
            D++++ A+ LMRR+PP+  E                    VDQPL++  D+  GK+++LC+YNRD DSYRSPWSNKY PPLED   P A LRKLE+EAN  F  YRD Y+EG
Sbjct:    3 DQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEG 114          
BLAST of FC923375 vs. ExPASy Swiss-Prot
Match: CAPZB_PIG (F-actin-capping protein subunit beta OS=Sus scrofa GN=CAPZB PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.483e-27
Identity = 56/112 (50.00%), Postives = 72/112 (64.29%), Query Frame = 3
Query:  126 DKKMEAAMGLMRRMPPKHSETXXXXXXXXXXXXXXXXXXQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYEG 461
            D++++ A+ LMRR+PP+  E                    VDQPL++  D+  GK+++LC+YNRD DSYRSPWSNKY PPLED   P A LRKLE+EAN  F  YRD Y+EG
Sbjct:    3 DQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEG 114          
BLAST of FC923375 vs. ExPASy Swiss-Prot
Match: CAPZB_MOUSE (F-actin-capping protein subunit beta OS=Mus musculus GN=Capzb PE=1 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 1.483e-27
Identity = 56/112 (50.00%), Postives = 72/112 (64.29%), Query Frame = 3
Query:  126 DKKMEAAMGLMRRMPPKHSETXXXXXXXXXXXXXXXXXXQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYEG 461
            D++++ A+ LMRR+PP+  E                    VDQPL++  D+  GK+++LC+YNRD DSYRSPWSNKY PPLED   P A LRKLE+EAN  F  YRD Y+EG
Sbjct:    3 DQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEG 114          
BLAST of FC923375 vs. ExPASy Swiss-Prot
Match: CAPZB_HUMAN (F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB PE=1 SV=4)

HSP 1 Score: 121.709 bits (304), Expect = 1.483e-27
Identity = 56/112 (50.00%), Postives = 72/112 (64.29%), Query Frame = 3
Query:  126 DKKMEAAMGLMRRMPPKHSETXXXXXXXXXXXXXXXXXXQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYEG 461
            D++++ A+ LMRR+PP+  E                    VDQPL++  D+  GK+++LC+YNRD DSYRSPWSNKY PPLED   P A LRKLE+EAN  F  YRD Y+EG
Sbjct:    3 DQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEG 114          
BLAST of FC923375 vs. ExPASy Swiss-Prot
Match: CAPZB_CHICK (F-actin-capping protein subunit beta isoforms 1 and 2 OS=Gallus gallus GN=CAPZB PE=1 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 1.483e-27
Identity = 56/112 (50.00%), Postives = 72/112 (64.29%), Query Frame = 3
Query:  126 DKKMEAAMGLMRRMPPKHSETXXXXXXXXXXXXXXXXXXQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYEG 461
            D++++ A+ LMRR+PP+  E                    VDQPL++  D+  GK+++LC+YNRD DSYRSPWSNKY PPLED   P A LRKLE+EAN  F  YRD Y+EG
Sbjct:    3 DQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEG 114          
BLAST of FC923375 vs. ExPASy Swiss-Prot
Match: CAPZB_BOVIN (F-actin-capping protein subunit beta OS=Bos taurus GN=CAPZB PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.483e-27
Identity = 56/112 (50.00%), Postives = 72/112 (64.29%), Query Frame = 3
Query:  126 DKKMEAAMGLMRRMPPKHSETXXXXXXXXXXXXXXXXXXQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYEG 461
            D++++ A+ LMRR+PP+  E                    VDQPL++  D+  GK+++LC+YNRD DSYRSPWSNKY PPLED   P A LRKLE+EAN  F  YRD Y+EG
Sbjct:   32 DQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEG 143          
BLAST of FC923375 vs. ExPASy Swiss-Prot
Match: CAPZB_DROME (F-actin-capping protein subunit beta OS=Drosophila melanogaster GN=cpb PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.530e-27
Identity = 56/112 (50.00%), Postives = 71/112 (63.39%), Query Frame = 3
Query:  126 DKKMEAAMGLMRRMPPKHSETXXXXXXXXXXXXXXXXXXQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYEG 461
            + +M+ A+ LMRR+PP+  E                    VDQPL++  D+E GK+++LC+YNRD DSYRSPWSN Y+PPLED   P   LRKLEIEAN  F  YR+ YYEG
Sbjct:    3 EMQMDCALDLMRRLPPQQIEKNLIDLIDLAPDLCEDLLSSVDQPLKIAKDKEHGKDYLLCDYNRDGDSYRSPWSNSYYPPLEDGQMPSERLRKLEIEANYAFDQYREMYYEG 114          
BLAST of FC923375 vs. ExPASy Swiss-Prot
Match: CAPZB_CAEEL (F-actin-capping protein subunit beta OS=Caenorhabditis elegans GN=cap-2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 9.612e-27
Identity = 52/112 (46.43%), Postives = 72/112 (64.29%), Query Frame = 3
Query:  126 DKKMEAAMGLMRRMPPKHSETXXXXXXXXXXXXXXXXXXQVDQPLQVLFDEESGKEFILCEYNRDADSYRSPWSNKYHPPLEDALYPPAELRKLEIEANEVFAIYRDQYYEG 461
            +++++ A+ LMRR+PP+H +                    +DQPL++  D E+GK+++LC+YNRD DSYRSPWSN Y PPLED   P  + RK+EIEAN  F  YRD Y+EG
Sbjct:    3 EQQLDCALDLMRRLPPQHCDKNLTDLIDLCPHLVDDLLSTIDQPLKIAADRETGKQYLLCDYNRDGDSYRSPWSNTYDPPLEDGQLPSEKRRKMEIEANAAFESYRDLYFEG 114          
The following BLAST results are available for this feature:
BLAST of FC923375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CAPZB_ARATH3.762e-3971.56Probable F-actin-capping protein subunit beta OS=A... [more]
CAPZB_RAT1.483e-2750.00F-actin-capping protein subunit beta OS=Rattus nor... [more]
CAPZB_PONAB1.483e-2750.00F-actin-capping protein subunit beta OS=Pongo abel... [more]
CAPZB_PIG1.483e-2750.00F-actin-capping protein subunit beta OS=Sus scrofa... [more]
CAPZB_MOUSE1.483e-2750.00F-actin-capping protein subunit beta OS=Mus muscul... [more]
CAPZB_HUMAN1.483e-2750.00F-actin-capping protein subunit beta OS=Homo sapie... [more]
CAPZB_CHICK1.483e-2750.00F-actin-capping protein subunit beta isoforms 1 an... [more]
CAPZB_BOVIN1.483e-2750.00F-actin-capping protein subunit beta OS=Bos taurus... [more]
CAPZB_DROME2.530e-2750.00F-actin-capping protein subunit beta OS=Drosophila... [more]
CAPZB_CAEEL9.612e-2746.43F-actin-capping protein subunit beta OS=Caenorhabd... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31704D03EF StrClemenN Citrus clementina cDNA clone C31704D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923375 ID=FC923375; Name=FC923375; organism=Citrus clementina; type=EST; length=463bp
GGGATCAAAACGAGAAGGGTGAGCGCCTCTTCTGGTCATTTTGTTTTGTT
GCTTTCCTGCGCTTGCTTTGTGTCGAATATACAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGATAAGAAAATGGAGGCAGCAATGG
GATTGATGAGAAGAATGCCGCCGAAGCACTCGGAAACAGCACTGTCTGCA
CTTCTCAGCCTCTTGCCTGATCACTCCTCCGATCTCCTCTCTCAAGTCGA
TCAGCCTCTCCAGGTTTTATTTGATGAGGAGAGCGGGAAAGAGTTCATTT
TGTGTGAATACAACAGAGATGCTGATTCTTATAGGTCTCCTTGGTCAAAT
AAGTACCATCCGCCATTGGAAGATGCACTGTACCCTCCTGCAGAGTTAAG
GAAGCTTGAAATTGAAGCGAATGAAGTGTTTGCAATTTATCGTGACCAGT
ATTATGAAGGTGG
back to top