FC923378

Overview
NameFC923378
Unique NameFC923378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2675 contig Ccv1_Contig2675:218..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA3_ARATH (NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana GN=ECR1 PE=1 SV=2)

HSP 1 Score: 280.411 bits (716), Expect = 5.578e-75
Identity = 137/166 (82.53%), Postives = 147/166 (88.55%), Query Frame = 2
Query:  155 GNLVGPTFEPGAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            GNLV P F PG  LRDD+++Y RILV+GAGGLGCELLKDLALSGF+NLEVIDMDRIEV+NLNRQFLFR+EDVGKPKAEVAAKRVMERVSGV IVPHF RIEDK+I FYNDFNII LGLDSIEAR YIN VAC FLEY  DD P+ ET +PMVDGGTEGFKGH RVI
Sbjct:   26 GNLVDPGFVPGPGLRDDIRDYVRILVIGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRIEDVGKPKAEVAAKRVMERVSGVEIVPHFSRIEDKEIEFYNDFNIIALGLDSIEARKYINGVACGFLEYNEDDTPKRETIKPMVDGGTEGFKGHARVI 191          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA3_CAEEL (NEDD8-activating enzyme E1 catalytic subunit OS=Caenorhabditis elegans GN=uba-3 PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 3.408e-48
Identity = 100/161 (62.11%), Postives = 116/161 (72.05%), Query Frame = 2
Query:  170 PTFEPGAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            P F PG E  + LQ   +ILV+GAGGLGCELLK+LALSGF+ +EVIDMD I+VSNLNRQFLFR  DVGK KAEVAA  V +RV G  +  H CRIEDK   FY  F+II+ GLDSI AR +IN + C  +    D KP E T  PM+DGGTEGFKG+ RVI
Sbjct:   28 PWFVPGPENFEALQN-TKILVIGAGGLGCELLKNLALSGFRTIEVIDMDTIDVSNLNRQFLFRESDVGKSKAEVAAAFVQQRVVGCQVTAHNCRIEDKGQEFYRKFSIIICGLDSIPARRWINGMLCDLVLEMADGKPDENTIIPMIDGGTEGFKGNARVI 187          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA3_DICDI (NEDD8-activating enzyme E1 catalytic subunit OS=Dictyostelium discoideum GN=uba3 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.393e-47
Identity = 91/170 (53.53%), Postives = 120/170 (70.59%), Query Frame = 2
Query:  155 GNLVGPTFEPGAE----LRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            G    P+FEP  +    + + LQ   ++LV+GAGGLGCE+LK+LALSGF+N++VIDMD I++SNLNRQFLFR +DVGK KAEVAA  +  R++G N+ PH CRI+DKD  +Y  F I++ GLDSIEAR +IN +  + +          +T  P+VDGGTEGFKG  RVI
Sbjct:   25 GPFASPSFEPDTKASPNIMNGLQNDFKVLVIGAGGLGCEILKNLALSGFRNIDVIDMDTIDISNLNRQFLFRRKDVGKSKAEVAAAFINSRITGCNVTPHKCRIQDKDEDYYRQFKIVIAGLDSIEARRWINGLLVNLVVVNDSGDIEPDTIIPLVDGGTEGFKGQARVI 194          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA3_RAT (NEDD8-activating enzyme E1 catalytic subunit OS=Rattus norvegicus GN=Uba3 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.440e-46
Identity = 95/167 (56.89%), Postives = 121/167 (72.46%), Query Frame = 2
Query:  152 AGNLVGPTFEPGAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            +G    P FEP  E    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VSNLNRQFLFR +DVG+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLDSI AR +IN +  S L YE D      +  P++DGGTEGFKG+ RVI
Sbjct:   48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDVGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVI 213          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA3_MOUSE (NEDD8-activating enzyme E1 catalytic subunit OS=Mus musculus GN=Uba3 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.440e-46
Identity = 95/167 (56.89%), Postives = 121/167 (72.46%), Query Frame = 2
Query:  152 AGNLVGPTFEPGAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            +G    P FEP  E    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VSNLNRQFLFR +DVG+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLDSI AR +IN +  S L YE D      +  P++DGGTEGFKG+ RVI
Sbjct:   48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDVGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVI 213          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA3_PONAB (NEDD8-activating enzyme E1 catalytic subunit OS=Pongo abelii GN=UBA3 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 7.105e-46
Identity = 94/167 (56.29%), Postives = 121/167 (72.46%), Query Frame = 2
Query:  152 AGNLVGPTFEPGAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            +G    P FEP  E    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLDSI AR +IN +  S L YE D      +  P++DGGTEGFKG+ RVI
Sbjct:   48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVI 213          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA3_HUMAN (NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 7.105e-46
Identity = 94/167 (56.29%), Postives = 121/167 (72.46%), Query Frame = 2
Query:  152 AGNLVGPTFEPGAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            +G    P FEP  E    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLDSI AR +IN +  S L YE D      +  P++DGGTEGFKG+ RVI
Sbjct:   48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVI 213          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA3_DANRE (NEDD8-activating enzyme E1 catalytic subunit OS=Danio rerio GN=uba3 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.583e-45
Identity = 94/166 (56.63%), Postives = 120/166 (72.29%), Query Frame = 2
Query:  155 GNLVGPTFEPGAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            G    P FE   E    L +  +ILV+GAGGLGCELLKDLALSGF+++ V+DMD I+VSNLNRQFLFR +DVG+PKAEVAA  V +RV G ++VPHF +I+D D +FY  F+I+V GLDS+ AR ++N +  S L YE D      +  P++DGGTEGFKG+ RVI
Sbjct:   48 GPFTHPDFEASTESLQFLLDTCKILVIGAGGLGCELLKDLALSGFRHIHVVDMDTIDVSNLNRQFLFRPKDVGRPKAEVAADFVNDRVPGCSVVPHFKKIQDLDETFYRQFHIVVCGLDSVIARRWMNGMLLSLLIYE-DGVLDPSSIIPLIDGGTEGFKGNARVI 212          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA3_DROME (NEDD8-activating enzyme E1 catalytic subunit OS=Drosophila melanogaster GN=CG13343 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.301e-43
Identity = 89/159 (55.97%), Postives = 110/159 (69.18%), Query Frame = 2
Query:  176 FEPGAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            F   +E  + LQ   ++L++GAGGLGCELLKDLAL GF NL VIDMD IE+SNLNRQFLFR  D+G  KAE AA+ +  RV    + PHF +I+D D SFY  F+++V GLDSI AR +IN +  S L YE D      +  PM+DGGTEGFKG+ RVI
Sbjct:   35 FAASSENLEFLQTKCQVLIIGAGGLGCELLKDLALMGFGNLHVIDMDTIELSNLNRQFLFRRTDIGASKAECAARFINARVPTCRVTPHFKKIQDFDESFYQQFHLVVCGLDSIVARRWINGMLLSMLRYEEDGTIDTSSIVPMIDGGTEGFKGNARVI 193          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA3_SCHPO (NEDD8-activating enzyme E1 catalytic subunit OS=Schizosaccharomyces pombe GN=uba3 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.291e-36
Identity = 74/145 (51.03%), Postives = 104/145 (71.72%), Query Frame = 2
Query:  218 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            ++IL++GAGGLGCE+LKDLALSGF++L VIDMD I+++NLNRQFLF   ++ +PKA VAA  +M+R+    + P + +I+DK I FY +F +I+ GLDS+EAR +IN+   +    +T D        P+VDGG+EG KG  RVI
Sbjct:   45 SKILIIGAGGLGCEILKDLALSGFRDLSVIDMDTIDITNLNRQFLFNESNIDEPKANVAASMIMKRIPSTVVTPFYGKIQDKTIEFYKEFKLIICGLDSVEARRWINSTLVAIA--KTGDL------IPLVDGGSEGLKGQARVI 181          
The following BLAST results are available for this feature:
BLAST of FC923378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
UBA3_ARATH5.578e-7582.53NEDD8-activating enzyme E1 catalytic subunit OS=Ar... [more]
UBA3_CAEEL3.408e-4862.11NEDD8-activating enzyme E1 catalytic subunit OS=Ca... [more]
UBA3_DICDI8.393e-4753.53NEDD8-activating enzyme E1 catalytic subunit OS=Di... [more]
UBA3_RAT5.440e-4656.89NEDD8-activating enzyme E1 catalytic subunit OS=Ra... [more]
UBA3_MOUSE5.440e-4656.89NEDD8-activating enzyme E1 catalytic subunit OS=Mu... [more]
UBA3_PONAB7.105e-4656.29NEDD8-activating enzyme E1 catalytic subunit OS=Po... [more]
UBA3_HUMAN7.105e-4656.29NEDD8-activating enzyme E1 catalytic subunit OS=Ho... [more]
UBA3_DANRE1.583e-4556.63NEDD8-activating enzyme E1 catalytic subunit OS=Da... [more]
UBA3_DROME3.301e-4355.97NEDD8-activating enzyme E1 catalytic subunit OS=Dr... [more]
UBA3_SCHPO2.291e-3651.03NEDD8-activating enzyme E1 catalytic subunit OS=Sc... [more]

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Properties
Property NameValue
Genbank descriptionC31704D06EF StrClemenN Citrus clementina cDNA clone C31704D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923378 ID=FC923378; Name=FC923378; organism=Citrus clementina; type=EST; length=654bp
AAGACCCAGCGTCAAAGCCAAGCTATCAGCATATTTTCGCAACGGCTAAA
TCAGAACCAAATACAGTGATAGTAAGCGAGTGTGAGAATTGTTGCAAATG
GCTGACACGGCACCGAGCCGATCCCGAGACCTAGACAAGCTCTTACTCCG
AGCCGGTAATCTCGTGGGCCCCACTTTCGAACCCGGCGCAGAATTGAGAG
ATGACTTACAAGAATATGCGCGAATTTTGGTTGTTGGAGCCGGTGGATTG
GGCTGCGAATTGTTGAAAGACTTAGCTTTATCGGGTTTTAAAAACCTAGA
GGTCATTGATATGGACCGTATCGAAGTTTCGAATCTCAATCGCCAGTTTC
TTTTCAGGATGGAAGATGTTGGTAAGCCAAAGGCAGAGGTGGCAGCAAAG
CGTGTCATGGAGAGAGTTAGTGGTGTAAATATTGTCCCACATTTTTGCCG
AATTGAGGATAAAGACATTTCATTTTACAATGATTTTAATATCATTGTCC
TTGGTCTCGATTCCATCGAGGCTCGGAGCTATATAAATGCTGTAGCATGT
AGTTTTCTTGAATATGAGACTGATGACAAGCCACGAGAAGAAACAAATCA
ACCCATGGTAGATGGGGGTACTGAAGGTTTTAAGGGTCATGGCAGGGTTA
TTAT
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