FC923384

Overview
NameFC923384
Unique NameFC923384
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923384_ssr118 microsatellite FC923384_ssr118:118..129. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14452 contig Ccv1_Contig14452:1..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923384 vs. ExPASy Swiss-Prot
Match: COAD_ARATH (Phosphopantetheine adenylyltransferase OS=Arabidopsis thaliana GN=COAD PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 6.977e-63
Identity = 116/137 (84.67%), Postives = 131/137 (95.62%), Query Frame = 2
Query:  275 NSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIESVDLV 685
            +S +SP NS+GAVVLGGTFDRLHDGHR+FLKA+AELARDRIVVGVCDGPMLT KQF+++IQP++ERMRNVE Y+KSIKPELVVQ EPITDPYGPSIVDENLEAIVVSKETLPGGLSVN+KRA+RGLSQLKIE V++V
Sbjct:    6 DSKMSPANSFGAVVLGGTFDRLHDGHRMFLKAAAELARDRIVVGVCDGPMLTKKQFSDMIQPIEERMRNVETYVKSIKPELVVQAEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNRKRAERGLSQLKIEVVEIV 142          
BLAST of FC923384 vs. ExPASy Swiss-Prot
Match: COASY_MOUSE (Bifunctional coenzyme A synthase OS=Mus musculus GN=Coasy PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.286e-24
Identity = 55/139 (39.57%), Postives = 85/139 (61.15%), Query Frame = 2
Query:  269 VVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIESVDLV 685
            V  S   P   Y    +GGTFDRLH+ H++ L  +  LA++++VVGV D  +L +K   EL+QP  ER+ ++  ++  IKP L  +  P+ DPYGP+  D  LE +VVS+ET  GG++VN+ R + G  +L +  + L+
Sbjct:  179 VARSPRQPVRGYHRGAVGGTFDRLHNAHKVLLSVACVLAQEQLVVGVADKDLLKSKLLPELLQPYAERVEHLTEFLVDIKPSLTFELVPLLDPYGPAGSDPTLEFLVVSEETYRGGMAVNRFRLENGKEELALYQIQLL 317          
BLAST of FC923384 vs. ExPASy Swiss-Prot
Match: COASY_PIG (Bifunctional coenzyme A synthase OS=Sus scrofa GN=COASY PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.194e-24
Identity = 55/139 (39.57%), Postives = 86/139 (61.87%), Query Frame = 2
Query:  269 VVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIESVDLV 685
            V  S   P   +    +GGTFDRLH+ H++ L  +  LA++++VVGV D  +L +K   EL+QP  ER+ ++  ++  IKP L     P+ DPYGP+  D +LE +VVS+ET  GG++VN+ R + GL +L +  + L+
Sbjct:  179 VARSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADKDLLKSKLLPELLQPYTERVEHLSEFLVDIKPSLSFDLIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAVNRFRLENGLEELTLYQIQLL 317          
BLAST of FC923384 vs. ExPASy Swiss-Prot
Match: COASY_HUMAN (Bifunctional coenzyme A synthase OS=Homo sapiens GN=COASY PE=1 SV=4)

HSP 1 Score: 112.079 bits (279), Expect = 2.866e-24
Identity = 54/139 (38.85%), Postives = 85/139 (61.15%), Query Frame = 2
Query:  269 VVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIESVDLV 685
            V  S   P   Y    +GGTFDRLH+ H++ L  +  LA++++VVGV D  +L +K   EL+QP  ER+ ++  ++  IKP L     P+ DPYGP+  D +LE +VVS+ET  GG+++N+ R +  L +L +  + L+
Sbjct:  180 VAGSPKQPVRGYYRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADKDLLKSKLLPELLQPYTERVEHLSEFLVDIKPSLTFDVIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAINRFRLENDLEELALYQIQLL 318          
BLAST of FC923384 vs. ExPASy Swiss-Prot
Match: YG5T_YEAST (Uncharacterized protein YGR277C OS=Saccharomyces cerevisiae GN=YGR277C PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.384e-24
Identity = 51/130 (39.23%), Postives = 82/130 (63.08%), Query Frame = 2
Query:  296 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIESVDLV 685
            N +    LGGTFD +HDGH++ L  S  +   R++ G+    +L NK++ ELI+P D R R+V  +IK +KP+L V+  P+ D  GP+     +E +VVS+ET+ G  +VNK R ++G+S L +  V+++
Sbjct:  140 NKFHVTALGGTFDHIHDGHKILLSVSTFITSQRLICGITCDELLQNKKYKELIEPYDTRCRHVHQFIKLLKPDLSVELVPLRDVCGPTGKVPEIECLVVSRETVSGAETVNKTRIEKGMSPLAVHVVNVL 269          
BLAST of FC923384 vs. ExPASy Swiss-Prot
Match: YDA8_SCHPO (Uncharacterized protein C1F12.08 OS=Schizosaccharomyces pombe GN=SPAC1F12.08 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 43/123 (34.96%), Postives = 73/123 (59.35%), Query Frame = 2
Query:  317 LGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIESVDLV 685
            +GGTFD LH GH++ L  +A      ++VGV    +L  K   E ++ + +R   V  ++ SIK ++  +   I DP+GP+I D  +++++VS+ET  G  +V ++R  RGL +L I  +DL+
Sbjct:  161 VGGTFDHLHVGHKVLLTLTAWFGVKEVIVGVSGDELLKKKVQKEFLENIQKRKEEVSNFLHSIKEDINCRVVTIHDPFGPTITDAEIDSLIVSEETKTGATAVQEERVKRGLPELSIYCIDLL 283          
BLAST of FC923384 vs. ExPASy Swiss-Prot
Match: COAD_PYRAE (Phosphopantetheine adenylyltransferase OS=Pyrobaculum aerophilum GN=coaD PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 55/126 (43.65%), Postives = 74/126 (58.73%), Query Frame = 2
Query:  311 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVC-DGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIESVDLV 685
            VVLGGTFD LH GH + L A+A L  DRI++G+  D    T KQ+   ++P   R+ N+   +  I PE  V    I DPYGP++ D  LEAIV S ET P  L +N +RA RGL  +++  +  V
Sbjct:    8 VVLGGTFDTLHSGH-VKLLATATLIGDRILIGLTSDSFASTYKQYK--VRPFSVRLANLRNLMSLIAPEREVAYVEIHDPYGPAVFDPRLEAIVASIETAPRALQINDERAKRGLRPMEVFIISTV 130          
BLAST of FC923384 vs. ExPASy Swiss-Prot
Match: COAD_METTH (Phosphopantetheine adenylyltransferase OS=Methanobacterium thermoautotrophicum GN=coaD PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.899e-16
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 2
Query:  302 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIESVDLV 685
            Y  V +GGTFDR H GHR  L  +  +  + +++GV        K   E I+P   RM+N+E Y++    +  V    + DPYG ++ DE  EAIVVS+ET P    +N  R +RG  +L I ++D+V
Sbjct:    5 YSLVAVGGTFDRFHKGHRRLLDEAFRVG-ETVMIGVTSDEFAAAK--GEGIEPCSVRMKNLEEYLRDKDADYHVMR--LDDPYGTTVTDEAFEAIVVSRETEPVAREINAIRRNRGFRELDIITIDMV 127          
BLAST of FC923384 vs. ExPASy Swiss-Prot
Match: COAD_METKA (Phosphopantetheine adenylyltransferase OS=Methanopyrus kandleri GN=coaD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 48/134 (35.82%), Postives = 77/134 (57.46%), Query Frame = 2
Query:  284 ISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIESVDLV 685
            ++P   +  VV+GGTFDRLH GH+  L  + EL  DR+V+GV     +  ++  + ++P +ER+R V  +++       V+  P+ D YG ++ D+ ++AIVVS ET P  L +N+ R  RG   L I  +  V
Sbjct:    1 MTPLARFRKVVVGGTFDRLHLGHQRLLSVALELG-DRVVIGVTTDSFV-REEGKKGVEPFEERVRAVRRFVEEKGASDRVEIVPLEDRYGTTLEDDEMDAIVVSPETEPVALEINELRRKRGFPPLSIVVIPFV 132          
BLAST of FC923384 vs. ExPASy Swiss-Prot
Match: COAD_THEGJ (Phosphopantetheine adenylyltransferase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=coaD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.511e-14
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 2
Query:  302 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKIESVDLV 685
            Y  VV+GGTFDRLH GH+  L+ + E+ R  + VG+    M+ NK +AE I P + R+ ++  + + +      +   I    G +   ++LEAIVVS+ET  G L VN+ R +RGL  L+I ++ LV
Sbjct:    5 YRKVVVGGTFDRLHLGHKALLRKAFEVGR-YVYVGLTSDEMIRNKPYAEKILPYELRLMDLLKFFE-VNGYTNYRIIKINTAIGFADRIKSLEAIVVSEETYKGALLVNRAREERGLKPLEIVTIKLV 130          
The following BLAST results are available for this feature:
BLAST of FC923384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COAD_ARATH6.977e-6384.67Phosphopantetheine adenylyltransferase OS=Arabidop... [more]
COASY_MOUSE1.286e-2439.57Bifunctional coenzyme A synthase OS=Mus musculus G... [more]
COASY_PIG2.194e-2439.57Bifunctional coenzyme A synthase OS=Sus scrofa GN=... [more]
COASY_HUMAN2.866e-2438.85Bifunctional coenzyme A synthase OS=Homo sapiens G... [more]
YG5T_YEAST6.384e-2439.23Uncharacterized protein YGR277C OS=Saccharomyces c... [more]
YDA8_SCHPO5.235e-1834.96Uncharacterized protein C1F12.08 OS=Schizosaccharo... [more]
COAD_PYRAE8.929e-1843.65Phosphopantetheine adenylyltransferase OS=Pyrobacu... [more]
COAD_METTH4.899e-1637.50Phosphopantetheine adenylyltransferase OS=Methanob... [more]
COAD_METKA6.399e-1635.82Phosphopantetheine adenylyltransferase OS=Methanop... [more]
COAD_THEGJ3.511e-1438.28Phosphopantetheine adenylyltransferase OS=Thermoco... [more]

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Properties
Property NameValue
Genbank descriptionC31704D12EF StrClemenN Citrus clementina cDNA clone C31704D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923384 ID=FC923384; Name=FC923384; organism=Citrus clementina; type=EST; length=687bp
GACATCATTTATGTACCGGATGCAAGTACAACAACACCGCTCCCGACCCT
CAACCTAACCCGCCGCAAAATGAAACAGTAACAGGATCACCACCATTAGG
GTCAGCAAAGGGCGAGGCAAACAAACAAATCAAGTCCAGATTCGGTGTAC
CTGCCTAAGCGGTCCCACAAAATCGGAATAAAGGGGGCAATTTATTTGCT
AGAAGAAATCATTAATCATTAATCTCGTTCGTCTGTTTTAAATGAAAATG
GCGATTTTGGATGAATCAGTGGTCAATTCCAACATTTCACCCGACAATTC
TTACGGAGCTGTTGTCCTCGGTGGTACCTTTGACCGATTACACGACGGCC
ACCGCCTTTTTCTCAAGGCTTCGGCTGAACTTGCGAGGGATCGAATTGTG
GTTGGAGTTTGTGACGGACCTATGTTGACCAACAAACAGTTTGCAGAGTT
AATTCAACCTGTCGACGAAAGGATGCGTAATGTTGAAGCTTACATCAAGT
CTATTAAGCCAGAGCTTGTAGTGCAAACTGAACCTATTACAGACCCATAT
GGCCCTTCAATTGTTGATGAAAATTTAGAAGCTATCGTTGTCAGCAAGGA
AACATTACCTGGTGGCCTTTCAGTCAATAAGAAGAGAGCTGACAGAGGCC
TATCCCAGCTGAAGATTGAAAGTGTGGATCTAGTTTC
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