FC923386

Overview
NameFC923386
Unique NameFC923386
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923386 vs. ExPASy Swiss-Prot
Match: U4974_VITVI (UPF0497 membrane protein 4 OS=Vitis vinifera GN=GSVIVT00019813001 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.844e-17
Identity = 46/112 (41.07%), Postives = 59/112 (52.68%), Query Frame = 3
Query:  210 KQNKVVPLKIIPTLPPVNVAVTAKWQYSSAFVFNVVSNXXXXXXXXXXXXXXXXDKNGNKGXXXXXXXXXXXXXXXXFSXXXXXXXXXXXXYQGNSHVQWRKVCDVFGEFCS 545
            KQ KVV L+++PTLPP++V VTAKW+Y SAFV+ VVSN                +  GNKG                FS            Y+GNS V+W KVC+VFG+FC+
Sbjct:   53 KQTKVVSLQLLPTLPPMDVPVTAKWRYLSAFVYFVVSNAIACSYAALSLLLSVGNSKGNKGLGLAITVMDLVMVALLFSSNGAAGAIGLMGYEGNSRVRWGKVCNVFGKFCN 164          
BLAST of FC923386 vs. ExPASy Swiss-Prot
Match: U497B_SOYBN (UPF0497 membrane protein 11 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.908e-13
Identity = 38/111 (34.23%), Postives = 54/111 (48.65%), Query Frame = 3
Query:  210 KQNKVVPLKIIPTLPPVNVAVTAKWQYSSAFVFNVVSNXXXXXXXXXXXXXXXXDKNGNKGXXXXXXXXXXXXXXXXFSXXXXXXXXXXXXYQGNSHVQWRKVCDVFGEFC 542
            KQ K+VP+++  + PP+NV +TAKW   SAFV+ +V+N                ++  +KG                FS            Y+GNSHV W KVC+VFG+FC
Sbjct:   46 KQTKLVPIQLSDSFPPLNVPLTAKWHQMSAFVYFLVTNAIACTYAAMSLLLALVNRGKSKGLWTLIAVLDTFMVALLFSGNGAAAAVGILGYKGNSHVNWNKVCNVFGKFC 156          
BLAST of FC923386 vs. ExPASy Swiss-Prot
Match: U497A_SOYBN (UPF0497 membrane protein 10 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.551e-13
Identity = 38/111 (34.23%), Postives = 54/111 (48.65%), Query Frame = 3
Query:  210 KQNKVVPLKIIPTLPPVNVAVTAKWQYSSAFVFNVVSNXXXXXXXXXXXXXXXXDKNGNKGXXXXXXXXXXXXXXXXFSXXXXXXXXXXXXYQGNSHVQWRKVCDVFGEFC 542
            KQ KVVP+++  +LPP++V +TAKW   SA V+ +V+N                ++  +KG                FS            Y+GNSHV W KVC+VFG+FC
Sbjct:   45 KQTKVVPIQLSDSLPPLDVPLTAKWHQMSAIVYFLVTNAIACTYAVLSLLLALVNRGKSKGLWTLIAVLDAFMVALLFSGNGAAAAVGVLGYKGNSHVNWNKVCNVFGKFC 155          
BLAST of FC923386 vs. ExPASy Swiss-Prot
Match: U4976_VITVI (UPF0497 membrane protein 6 OS=Vitis vinifera GN=GSVIVT00023588001 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 41/114 (35.96%), Postives = 51/114 (44.74%), Query Frame = 3
Query:  210 KQNKVVPLKIIPTLPPVNVAVTAKWQYSSAFVFNVVSN-XXXXXXXXXXXXXXXXDKNGNKGXXXXXXXXXXXXXXXXFSXXXXXXXXXXXXYQGNSHVQWRKVCDVFGEFCSH 548
            KQ K++PL +I TLP ++V VTAKW   SAFV+ VVSN                  + G  G                FS              GNSHV+W+KVC+VF  FC H
Sbjct:   56 KQTKIIPLTLIKTLPSLHVPVTAKWSDMSAFVYLVVSNAIACSYAAISLVLVTMLGRRGKGGRVLAVIVLDLHMVGLLFSANGAATAVGVLGQYGNSHVEWKKVCNVFDSFCHH 169          
BLAST of FC923386 vs. ExPASy Swiss-Prot
Match: U497C_RICCO (UPF0497 membrane protein 12 OS=Ricinus communis GN=RCOM_0680180 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.047e-11
Identity = 39/111 (35.14%), Postives = 51/111 (45.95%), Query Frame = 3
Query:  213 QNKVVPLKIIPTLPPVNVAVTAKWQYSSAFVFNVVSNXXXXXXXXXXXXXXXXDKNGNKGXXXXXXXXXXXXXXXXFSXXXXXXXXXXXXYQGNSHVQWRKVCDVFGEFCS 545
            Q + VP+++  ++PP+ V V AKW Y SAFVF VVSN                   G K                 FS            Y+GNSHV+W KVC+VFG+FC+
Sbjct:   53 QTETVPIQLTSSMPPLYVPVVAKWHYLSAFVFFVVSNAIACSYAAISVMLSFC---GKKSMVPIILTLDLLMVALLFSSNGAATAIGVMGYKGNSHVKWNKVCNVFGKFCN 160          
The following BLAST results are available for this feature:
BLAST of FC923386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
U4974_VITVI2.844e-1741.07UPF0497 membrane protein 4 OS=Vitis vinifera GN=GS... [more]
U497B_SOYBN1.908e-1334.23UPF0497 membrane protein 11 OS=Glycine max PE=2 SV... [more]
U497A_SOYBN5.551e-1334.23UPF0497 membrane protein 10 OS=Glycine max PE=2 SV... [more]
U4976_VITVI4.699e-1235.96UPF0497 membrane protein 6 OS=Vitis vinifera GN=GS... [more]
U497C_RICCO1.047e-1135.14UPF0497 membrane protein 12 OS=Ricinus communis GN... [more]
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Properties
Property NameValue
Genbank descriptionC31704E02EF StrClemenN Citrus clementina cDNA clone C31704E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923386 ID=FC923386; Name=FC923386; organism=Citrus clementina; type=EST; length=628bp
GGAGTGAATGTGTTCATTTGTTGACAAAATTCTCTATTCTTTGAAGGGTT
ACTTGTCTGTTTGTTTCTTGGGAATTTGGAATGGATGGGCTGGAGGGAAA
GTCAGAGGTTGCAGGAAATTATAAGAGAAAGCTGAATCATGGTGATTTGA
GTCTGAGGGTATTGGCCTTGGCGCTAACACTTGTCGCAGCAATAGTTCTT
GGAGTTGGTAAGCAAAATAAGGTTGTTCCACTCAAGATTATACCAACTTT
GCCTCCTGTTAATGTTGCAGTCACCGCTAAGTGGCAGTACTCTTCTGCTT
TTGTGTTCAATGTGGTGTCAAATGCCATAGCATGCTCATACGCAGCAATC
TCTCTACTCCTTTTGTTGGCTGACAAGAATGGAAACAAGGGCTTGGCTAT
GTTGATCCTTCTTCTTGACCTAGCAATGGTAGCGCTGCTCTTTTCGGCCA
ACGGCGCCGCTGGTGCCGTCGGCCTCGTGGGCTACCAGGGGAATTCGCAT
GTGCAATGGAGAAAGGTGTGCGACGTTTTTGGGGAATTTTGCAGCCACGT
TGCAGTCGCAGTTGTTCTCTCTCTCCTTGGTTCACTGGCTTTCTTCTTGC
TAGTTGCCTTGGCTGCNATGAGAATTCT
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