FC923404

Overview
NameFC923404
Unique NameFC923404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923404 vs. ExPASy Swiss-Prot
Match: Y5262_ARATH (Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.572e-43
Identity = 88/156 (56.41%), Postives = 118/156 (75.64%), Query Frame = 2
Query:   14 VNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQ-----NNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKHLHKMHAEGLNNAINSTTVVAVLIATIAFAAIFQVPGQF 466
            +N  D KGN+PLHIA RK R +IV+ +L   E +   VN++GETALD AEKTG   +  LL++ G+++A+++KP      +  +R+LK+TVS+I HEVH QLE T +TRR + GIAK ++KMH EGLNNAINSTT+VA+LIAT+AFAAIF VPGQ+
Sbjct:  220 INSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQY 375          
BLAST of FC923404 vs. ExPASy Swiss-Prot
Match: Y3236_ARATH (Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 9.561e-33
Identity = 77/154 (50.00%), Postives = 100/154 (64.94%), Query Frame = 2
Query:    2 EPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES-AKNMKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKHLHKMHAEGLNNAINSTTVVAVLIATIAFAAIFQVPG 460
            +PA V   D   N+ LH+ATRK R +IV LLL+  +TN N + R  +TALD AE    S  ++ ++E    S A      N P  EL+ TV+ IK++VH QLE T++T + VH I+K L K+H EG+NNA NS TVVAVL AT+AFAAIF VPG
Sbjct:  289 DPAIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPG 442          
BLAST of FC923404 vs. ExPASy Swiss-Prot
Match: Y2168_ARATH (Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.076e-31
Identity = 78/154 (50.65%), Postives = 99/154 (64.29%), Query Frame = 2
Query:   14 VNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES-AKNMK--PQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKHLHKMHAEGLNNAINSTTVVAVLIATIAFAAIFQVPGQF 466
            +N  D KGN+ LHIATRK R QI  LLL  +   +N +N   ETA+D A+K  +S  A  + E  VE+ AK+ +   + + AR LK+ VSDIKHEV  QL    +T RRV GIAK L K+H E + N  NS TVVAVL A+IAF AIF +PGQ+
Sbjct:  223 LNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQY 376          
The following BLAST results are available for this feature:
BLAST of FC923404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y5262_ARATH1.572e-4356.41Ankyrin repeat-containing protein At5g02620 OS=Ara... [more]
Y3236_ARATH9.561e-3350.00Ankyrin repeat-containing protein At3g12360 OS=Ara... [more]
Y2168_ARATH3.076e-3150.65Ankyrin repeat-containing protein At2g01680 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC31704F08EF StrClemenN Citrus clementina cDNA clone C31704F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923404 ID=FC923404; Name=FC923404; organism=Citrus clementina; type=EST; length=470bp
AGAACCGGCATCTGTAAACATGGTAGATACCAAAGGCAATTCACCATTGC
ATATAGCAACCAGAAAGGGTAGAGAACAGATTGTTAGGTTGCTACTGGCA
AATAGTGAAACTAACCTAAATGGAGTTAACAGGACTGGTGAAACTGCCCT
TGACACGGCTGAGAAAACAGGGCACAGCAACCTTGCGGCCCTCCTGCGCG
AACATGGGGTTGAAAGTGCCAAAAACATGAAACCCCAAAACAACCCAGCT
CGTGAGTTGAAACAAACTGTAAGTGATATAAAGCATGAAGTGCACTACCA
ACTAGAACACACCCGACAGACGAGAAGACGCGTGCACGGCATTGCAAAAC
ACCTCCACAAAATGCATGCTGAAGGTCTGAACAACGCGATCAACTCCACA
ACTGTCGTTGCTGTCCTTATAGCTACGATTGCATTTGCAGCCATTTTCCA
AGTCCCTGGCCAGTTTGTTG
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