FC923428

Overview
NameFC923428
Unique NameFC923428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923428_ssr51 microsatellite FC923428_ssr51:51..64. BLAST: Citrus ESTs to Prunus persica proteins V1
FC923428_ssr111 microsatellite FC923428_ssr111:111..134. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig963 contig Ccv1_Contig963:30..548. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923428 vs. ExPASy Swiss-Prot
Match: YAB2_ARATH (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.280e-19
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 1
Query:  238 MSLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSAL---QAVPL-QDPQLQKQHINLEDSIT-KDCGSSSK 489
            MS+D +SERVCYVHC++C TILAVSVP +SLF +VTVRCGHC NLL++N+  +L    A P+ QD Q  +QH      +T KDC SSS+
Sbjct:    1 MSVDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPIHQDLQPHRQHTT--SLVTRKDCASSSR 87          
BLAST of FC923428 vs. ExPASy Swiss-Prot
Match: YAB2_ORYSJ (Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.351e-17
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = 1
Query:  253 ASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQD---PQLQKQHINLEDSITKDCGSSSK 489
            A E VCYVHCN+CNTI AVSVP +S+ NIVTVRCGHC +LL+VN+   +QA+P +D     L+  +++  ++ + + GSSS+
Sbjct:    8 APEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYS-EYGSSSR 88          
BLAST of FC923428 vs. ExPASy Swiss-Prot
Match: YAB6_ORYSJ (Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.010e-17
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  238 MSLDLA-SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP-LQDPQLQKQHINLEDSITKDC 474
            MS  +A +E+VCYVHCN+CNTILAVSVP +S+ NIVTVRCGHC NLL+VN+   + + P LQD      H +L++S    C
Sbjct:    1 MSAQIAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQD----HHHHHLQESGLSGC 77          
BLAST of FC923428 vs. ExPASy Swiss-Prot
Match: YAB5_ARATH (Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.010e-17
Identity = 41/80 (51.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query:  250 LASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQKQHINLEDSITKDCGSSSK 489
            +A+E++CY+ CN+CN ILAV+VPCSSLF+IVTVRCGHC NL +VNM +ALQ+       L + +    +    + GSSS+
Sbjct:    6 MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQS-------LSRPNFQATNYAVPEYGSSSR 78          
BLAST of FC923428 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSJ (Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.433e-16
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 1
Query:  256 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQ 432
            +E++CYVHCN C+TILAV VPCSSLF  VTVRCGHCANLL+VN+   L   P   P  Q
Sbjct:   22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQ 80          
BLAST of FC923428 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSI (Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.433e-16
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 1
Query:  256 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQ 432
            +E++CYVHCN C+TILAV VPCSSLF  VTVRCGHCANLL+VN+   L   P   P  Q
Sbjct:   22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQ 80          
BLAST of FC923428 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSJ (Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.290e-15
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 1
Query:  259 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM 387
            E++CYVHCN+C+TILAV VPCSSLF  VTVRCGHCANLL+VN+
Sbjct:   29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNL 71          
BLAST of FC923428 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSI (Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.290e-15
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 1
Query:  259 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM 387
            E++CYVHCN+C+TILAV VPCSSLF  VTVRCGHCANLL+VN+
Sbjct:   29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNL 71          
BLAST of FC923428 vs. ExPASy Swiss-Prot
Match: YAB1_ORYSJ (Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.901e-15
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  238 MSLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQKQ 438
            MS+   SE VCYV+CNYCNTIL V+VP +  +NIVTVRCGHC  +L++++    QA  +QD Q+Q +
Sbjct:    1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQVQNR 67          
BLAST of FC923428 vs. ExPASy Swiss-Prot
Match: YAB3_ORYSJ (Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.419e-14
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1
Query:  229 IETMSLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM 387
            +   + D   E++CYVHC+YC+T+L VSVP SSLF  VTVRCGHC++LL VNM
Sbjct:   48 VAAAAADSEQEQLCYVHCHYCDTVLVVSVPSSSLFETVTVRCGHCSSLLTVNM 100          
The following BLAST results are available for this feature:
BLAST of FC923428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
YAB2_ARATH3.280e-1957.30Putative axial regulator YABBY 2 OS=Arabidopsis th... [more]
YAB2_ORYSJ2.351e-1751.22Protein YABBY 2 OS=Oryza sativa subsp. japonica GN... [more]
YAB6_ORYSJ4.010e-1755.56Protein YABBY 6 OS=Oryza sativa subsp. japonica GN... [more]
YAB5_ARATH4.010e-1751.25Axial regulator YABBY 5 OS=Arabidopsis thaliana GN... [more]
YAB4_ORYSJ4.433e-1664.41Protein YABBY 4 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ORYSI4.433e-1664.41Protein YABBY 4 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB5_ORYSJ1.290e-1579.07Protein YABBY 5 OS=Oryza sativa subsp. japonica GN... [more]
YAB5_ORYSI1.290e-1579.07Protein YABBY 5 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB1_ORYSJ4.901e-1553.73Protein YABBY 1 OS=Oryza sativa subsp. japonica GN... [more]
YAB3_ORYSJ5.419e-1460.38Protein YABBY 3 OS=Oryza sativa subsp. japonica GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31704H09EF StrClemenN Citrus clementina cDNA clone C31704H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923428 ID=FC923428; Name=FC923428; organism=Citrus clementina; type=EST; length=509bp
GGATCAGACTTGTCCTTTCAGATTTTTTTCTTCTCTTTTTATCACCATTT
TCTCTCTCTCTCTCCAAATAATTATTATTTATACATGAAATCAAACCATT
TTGTTCTGTTTTCTTCTTCTTCTTCTTCTTCTTCGTCTTTGTCTTTCTTT
TAATTTGTTCAAGATTTGATTGATTAATAATAGAACTCTTTGCGTTTCTA
TTGTTTGTCGGTACATTTCTTGATCTCCATTGAAACTATGTCACTGGACT
TGGCATCTGAACGTGTTTGTTATGTTCACTGCAACTACTGCAACACCATT
TTAGCGGTGAGTGTTCCTTGCTCAAGTTTGTTCAACATTGTGACTGTAAG
ATGTGGGCATTGTGCCAATTTGCTAAATGTAAACATGGTATCTGCACTTC
AAGCAGTTCCTCTTCAAGACCCTCAGTTGCAGAAACAACACATAAACCTA
GAAGATTCCATTACTAAGGATTGTGGATCATCTTCAAAATGCAATAAGTT
TTCTTCAGC
back to top