FC923435

Overview
NameFC923435
Unique NameFC923435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC923435 vs. ExPASy Swiss-Prot
Match: Y3739_ARATH (Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.626e-71
Identity = 146/258 (56.59%), Postives = 184/258 (71.32%), Query Frame = 1 
Query:    1 GSMVTSIFLGAYAVLVVYQESSLWFGLRYIIAALSIYDEYSNDILDMPEGSCFPRPQYRKKAD--LXXXXXXXXXXXXKDPPS-RTSSLR------KPIDXXXXXXXXXXXXCQRHGEIWVSEGLITAKDIEDAKSNSGSQVVSIGLPAYCLLQALLRSAMANSPGILLSDSVTEITSSNRPKDVFFDWFFNPFLIIKEQIKAENLTEAEEDYLSKLVLFCGNIGRLKDLN---VSPPESERKRAELGALARRLQGIT 738
            GS+++SIFLGAYA +V YQESS ++GL YI+A++SIYDEYS DILD+PEGSCFPRP+YR+K +               K+  S R  S+R      KP+D            C+R+GE+  ++GLI +KDIE+A+S+ GSQV+S+GLPAY LL  +LRS  ANS G+LLSD VTEIT+ NRPKDVFFDWF NPFLI+KEQ+KA NL+E EE YL +LVL  G+  RLK  N    SPP +ERKRAEL A ARR+QG+T
Sbjct:  255 GSVISSIFLGAYAGVVSYQESSFYYGLCYIVASVSIYDEYSTDILDLPEGSCFPRPKYRRKDEEPTPFSGPVPRLGSVKNASSMRGGSVRVPMIDIKPLDLLNELFVE----CRRYGEVLATKGLINSKDIEEARSSKGSQVISVGLPAYGLLYEILRSVKANSSGLLLSDGVTEITTMNRPKDVFFDWFLNPFLILKEQMKATNLSEEEEKYLGRLVLLFGDPERLKSSNAISASPPLTERKRAELDAFARRMQGLT 508
The following BLAST results are available for this feature:
BLAST of FC923435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3739_ARATH3.626e-7156.59Uncharacterized membrane protein At3g27390 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionC31705A04EF StrClemenN Citrus clementina cDNA clone C31705A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923435 ID=FC923435; Name=FC923435; organism=Citrus clementina; type=EST; length=745bp
GGCTCCATGGTGACCAGTATCTTCCTTGGTGCTTATGCAGTGTTGGTTGT
TTATCAGGAATCCTCCCTTTGGTTCGGGCTTCGCTATATTATTGCAGCCT
TGTCAATTTATGATGAATACAGCAATGACATACTTGACATGCCAGAAGGA
TCCTGCTTTCCTAGGCCCCAGTATCGAAAGAAGGCAGATCTCTCGCGGAC
CAGTACTTTCTCAAGGCCTAGCTCTTTCAAAGATCCTCCCTCTCGCACCA
GTTCACTTAGGAAGCCAATTGATTTGAAGCTTGAGCTTCTTGAGCGCTTA
TTTAAGGAGTGTCAACGCCATGGCGAGATCTGGGTTTCTGAAGGACTAAT
AACAGCTAAAGACATTGAAGATGCCAAATCTAATTCTGGTAGCCAAGTGG
TTAGTATAGGGTTGCCAGCATATTGTCTTCTCCAGGCACTCCTGCGCTCT
GCAATGGCCAATTCTCCGGGAATATTGTTGAGTGACAGCGTTACTGAGAT
AACTAGCTCAAACAGACCAAAGGACGTGTTCTTTGATTGGTTTTTTAACC
CCTTCTTGATAATCAAGGAGCAGATAAAAGCAGAAAACTTAACAGAGGCA
GAGGAGGACTACCTAAGCAAATTGGTACTATTTTGCGGCAATATTGGGAG
GTTAAAGGATTTAAATGTCTCACCGCCGGAATCTGAGCGTAAACGAGCGG
AACTTGGTGCATTAGCACGAAGGCTTCAGGGGATCACCAATCTGT
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