FC923476

Overview
NameFC923476
Unique NameFC923476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14474 contig Ccv1_Contig14474:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB1_PETHY (Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1)

HSP 1 Score: 389.808 bits (1000), Expect = 7.645e-108
Identity = 187/202 (92.57%), Postives = 196/202 (97.03%), Query Frame = 1
Query:  109 MTKQHPAWSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK 714
            MTKQ   WSPYDNNGGTCVA+AGADYCVIAADTRMSTGY+ILTRDYSKI KLADKCVMASSGFQADV+ALQK+LA+RHLIYQHQHNKQMSCP M QLLSNTLYYKRFFPYYSFNVLGGLD+EGKGCV+TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEA+DLVKTCFASATERDIYTGD+
Sbjct:    1 MTKQQANWSPYDNNGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKLADKCVMASSGFQADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAIDLVKTCFASATERDIYTGDR 202          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB1_ARATH (Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1 SV=2)

HSP 1 Score: 370.933 bits (951), Expect = 3.675e-102
Identity = 179/202 (88.61%), Postives = 191/202 (94.55%), Query Frame = 1
Query:  109 MTKQHPAWSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK 714
            MTKQH  WSPYDNNGGTCVAIAG+DYCVIAADTRMSTGYSIL+RDYSKI KLAD+ V++SSGFQADVKALQK+L +RHLIYQHQHNKQMSCP MAQLLSNTLY+KRFFPYY+FNVLGGLD EGKGCV+TYDAVGSYERVGY +QGSGSTLIMPFLDNQLKSPSPLLLP QD+ TPLSEAEAVDLVKT FASATERDIYTGDK
Sbjct:    1 MTKQHANWSPYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAVDLVKTVFASATERDIYTGDK 202          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB1_ORYSJ (Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica GN=PBF1 PE=2 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 6.283e-94
Identity = 163/192 (84.90%), Postives = 179/192 (93.23%), Query Frame = 1
Query:  139 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDK 714
            Y+NNGGTCVAIAGADYCV+AADTR+S GY+ILTRD+SKIC+LADKC +ASSGFQ D+KAL K LAAR L+YQHQHNK+MSCP MAQLLSNTLYYKRFFPYY+FNVLGGLD+EGKGCV+TYDAVGSYER GYS+QG+GS LIMP LDNQLKSPSPLLLPA+DAVTPLSE EAVDLVK  FASATERDIYTGDK
Sbjct:    9 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTYDAVGSYERTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFASATERDIYTGDK 200          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB1_DICDI (Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.416e-53
Identity = 108/198 (54.55%), Postives = 138/198 (69.70%), Query Frame = 1
Query:  121 HPAWSPYDNNGGTCVAIAGADYCVIAADTRMSTG-YSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 711
            H  +  Y +NGGT +A+AG DYCVIA DTRMS G Y I TR Y+KI +L  KCV+A+SG QAD  ALQK L +    ++ +H K MS P +AQ LSNTLYYKRFFPYY+FN++ G+D +G+G ++TYDAVGS+ERV YSSQGSG+ L++P LDNQ+   +  ++     V   S  + V  VK    SA ERDIYTGD
Sbjct:   20 HGRFEAYVDNGGTVLAVAGKDYCVIAGDTRMSDGGYGIQTRKYTKIFQLTKKCVLATSGMQADTIALQKRLKSMLESFEKEHGKPMSTPAIAQFLSNTLYYKRFFPYYTFNLVAGVDEQGEGWIWTYDAVGSHERVKYSSQGSGNQLVIPLLDNQVAKFNQQIVEGNKDV---SCEQVVSFVKDSITSAGERDIYTGD 214          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB1B_CARAU (Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.981e-47
Identity = 94/194 (48.45%), Postives = 128/194 (65.98%), Query Frame = 1
Query:  130 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 711
            +SPY  NGGT +A+AG D+ ++A+DTR+S GYSI +RD  K  KL D  V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +N++GGLD EG+G VY++D VGSY+R  Y + GS S ++ P LDNQ+   +           PLS+ +AV LVK  F SA ERD+YTGD
Sbjct:   26 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEQVPLSQEKAVQLVKDVFISAAERDVYTGD 215          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB1A_CARAU (Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.981e-47
Identity = 94/194 (48.45%), Postives = 128/194 (65.98%), Query Frame = 1
Query:  130 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 711
            +SPY  NGGT +A+AG D+ ++A+DTR+S GYSI +RD  K  KL D  V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +N++GGLD EG+G VY++D VGSY+R  Y + GS S ++ P LDNQ+   +           PLS+ +AV LVK  F SA ERD+YTGD
Sbjct:   27 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEQVPLSQEKAVQLVKDVFISAAERDVYTGD 216          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB1_HUMAN (Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 5.763e-47
Identity = 95/194 (48.97%), Postives = 128/194 (65.98%), Query Frame = 1
Query:  130 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 711
            +SPY  NGGT +AIAG D+ ++A+DTR+S G+SI TRD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PLS   A+ LVK  F SA ERD+YTGD
Sbjct:   30 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKDVFISAAERDVYTGD 219          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB1_BOVIN (Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.763e-47
Identity = 95/194 (48.97%), Postives = 128/194 (65.98%), Query Frame = 1
Query:  130 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 711
            +SPY  NGGT +AIAG D+ ++A+DTR+S G+SI TRD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PLS   A+ LVK  F SA ERD+YTGD
Sbjct:   30 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKDVFISAAERDVYTGD 219          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB1_MOUSE (Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.284e-46
Identity = 94/194 (48.45%), Postives = 128/194 (65.98%), Query Frame = 1
Query:  130 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 711
            +SPY  NGGT +AIAG D+ ++A+DTR+S G+SI TRD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PL+   A+ LVK  F SA ERD+YTGD
Sbjct:   29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLTLDRAMRLVKDVFISAAERDVYTGD 218          
BLAST of FC923476 vs. ExPASy Swiss-Prot
Match: PSB1_RAT (Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 1.087e-45
Identity = 93/194 (47.94%), Postives = 127/194 (65.46%), Query Frame = 1
Query:  130 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGD 711
            +SPY  NGGT +AIAG D+ ++A+DTR+S G+SI TRD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY +RFFPYY +N++ GLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PL+   A+ LVK  F SA ERD+YTGD
Sbjct:   29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLTLDRAMRLVKDVFISAAERDVYTGD 218          
The following BLAST results are available for this feature:
BLAST of FC923476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSB1_PETHY7.645e-10892.57Proteasome subunit beta type-1 OS=Petunia hybrida ... [more]
PSB1_ARATH3.675e-10288.61Proteasome subunit beta type-1 OS=Arabidopsis thal... [more]
PSB1_ORYSJ6.283e-9484.90Proteasome subunit beta type-1 OS=Oryza sativa sub... [more]
PSB1_DICDI1.416e-5354.55Proteasome subunit beta type-1 OS=Dictyostelium di... [more]
PSB1B_CARAU1.981e-4748.45Proteasome subunit beta type-1-B OS=Carassius aura... [more]
PSB1A_CARAU1.981e-4748.45Proteasome subunit beta type-1-A OS=Carassius aura... [more]
PSB1_HUMAN5.763e-4748.97Proteasome subunit beta type-1 OS=Homo sapiens GN=... [more]
PSB1_BOVIN5.763e-4748.97Proteasome subunit beta type-1 OS=Bos taurus GN=PS... [more]
PSB1_MOUSE1.284e-4648.45Proteasome subunit beta type-1 OS=Mus musculus GN=... [more]
PSB1_RAT1.087e-4547.94Proteasome subunit beta type-1 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionC31705E02EF StrClemenN Citrus clementina cDNA clone C31705E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923476 ID=FC923476; Name=FC923476; organism=Citrus clementina; type=EST; length=715bp
GACAGCTCTCGTTTCTTGTTCTCAAAGCCACTCTTAGATCTAAAACACTG
AAAACGAACCCAAATTCATATTATCCAAATTTCAAACCCTAATTGATCAC
AATTCATCATGACGAAGCAGCATCCTGCATGGTCTCCATACGACAACAAT
GGAGGAACTTGTGTTGCGATTGCTGGAGCTGATTACTGTGTAATCGCTGC
CGACACTCGAATGTCAACCGGTTACAGTATCCTCACTCGCGATTACTCCA
AAATCTGTAAACTGGCAGACAAATGTGTTATGGCCTCTTCTGGTTTTCAA
GCTGATGTGAAAGCCTTACAAAAACTCTTGGCAGCAAGGCACTTGATCTA
TCAGCATCAGCACAACAAGCAAATGAGCTGCCCTGGAATGGCTCAACTAC
TCTCCAACACCCTGTACTACAAGCGTTTCTTTCCTTACTATTCATTTAAT
GTCTTGGGTGGGCTTGACAACGAAGGGAAGGGTTGTGTCTACACATATGA
TGCTGTTGGTTCCTATGAGAGGGTTGGATATAGCTCCCAAGGTTCTGGGT
CCACGCTCATCATGCCATTCCTGGATAACCAACTAAAGTCTCCCAGTCCT
CTCCTACTGCCTGCCCAGGATGCTGTTACTCCTCTTTCAGAGGCTGAAGC
AGTTGATTTGGTCAAAACTTGTTTTGCATCAGCAACTGAGAGAGACATAT
ACACGGGAGACAAAC
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