FC923481

Overview
NameFC923481
Unique NameFC923481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length402
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923481 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 7.875e-13
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 2
Query:    2 MMEKYHIGEIDSSSVPAKRKYTPPQQ-AVNSPEDTGSAAKILQFLVPMLILGIAFAFRYFSKKE 190
            MM+KY IGEIDSSSVPA R Y  PQQ A N  +      KILQFLVP+LILG+A   R+++KK+
Sbjct:   71 MMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIKILQFLVPILILGLALVVRHYTKKD 134          
BLAST of FC923481 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.754e-12
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 2
Query:    2 MMEKYHIGEIDSSSVPAKRKYTPP-QQAVNSPEDTGSAAKILQFLVPMLILGIAFAFRYFSKKE 190
            MMEKY+IGEIDSS+VPA R Y  P Q A N  +      KILQFLVP+LILG+A   R ++KKE
Sbjct:   71 MMEKYYIGEIDSSTVPATRTYVAPVQPAYNQDKTPEFMIKILQFLVPILILGLALVVRQYTKKE 134          
BLAST of FC923481 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.908e-12
Identity = 29/63 (46.03%), Postives = 48/63 (76.19%), Query Frame = 2
Query:    2 MMEKYHIGEIDSSSVPAKRKYTPPQQA-VNSPEDTGSAAKILQFLVPMLILGIAFAFRYFSKK 187
            M+++Y++G+IDS+++P K KYTPP Q   N  + +    K+LQFLVP++ILG+AF  R+++K+
Sbjct:   71 MLDEYYVGDIDSATIPTKTKYTPPNQPHYNQDKTSEFVVKLLQFLVPLIILGVAFGIRFYTKQ 133          
BLAST of FC923481 vs. ExPASy Swiss-Prot
Match: CYB5S_TOBAC (Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.105e-12
Identity = 30/63 (47.62%), Postives = 48/63 (76.19%), Query Frame = 2
Query:    2 MMEKYHIGEIDSSSVPAKRKYTPPQQA-VNSPEDTGSAAKILQFLVPMLILGIAFAFRYFSKK 187
            M+++Y++G+IDSS++P K KYTPP+Q   N  + T    K+LQFLVP++ILG+AF   +++K+
Sbjct:   71 MLDEYYVGDIDSSTIPTKVKYTPPKQPHYNQDKTTEFIVKLLQFLVPLIILGVAFGVHFYTKQ 133          
BLAST of FC923481 vs. ExPASy Swiss-Prot
Match: CYB5_ORYSJ (Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.321e-11
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 2
Query:    2 MMEKYHIGEIDSSSVPAKRKYTPPQQA-VNSPEDTGSAAKILQFLVPMLILGIAFAFRYFSKKE 190
            MM++Y++G+ID+S++PA+ KY PP+Q   N  +      KILQFLVP+ ILG+A A R ++K E
Sbjct:   72 MMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLAILGLAVAIRIYTKSE 135          
BLAST of FC923481 vs. ExPASy Swiss-Prot
Match: CYB5_BOROF (Cytochrome b5 OS=Borago officinalis PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.644e-11
Identity = 29/62 (46.77%), Postives = 48/62 (77.42%), Query Frame = 2
Query:    2 MMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGS-AAKILQFLVPMLILGIAFAFRYFSK 184
            M+++Y++G+IDSSS+P++ KYTPP+Q + +P+ T     K+LQFLVP++IL  A   R+++K
Sbjct:   68 MLDEYYVGDIDSSSIPSQVKYTPPKQPLYNPDKTREFVIKLLQFLVPLVILAGAIGIRFYTK 129          
The following BLAST results are available for this feature:
BLAST of FC923481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CYB51_ARATH7.875e-1359.38Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
CYB5_BRAOB1.754e-1259.38Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
CYB5_TOBAC3.908e-1246.03Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
CYB5S_TOBAC5.105e-1247.62Cytochrome b5, seed isoform OS=Nicotiana tabacum P... [more]
CYB5_ORYSJ4.321e-1148.44Cytochrome b5 OS=Oryza sativa subsp. japonica GN=O... [more]
CYB5_BOROF5.644e-1146.77Cytochrome b5 OS=Borago officinalis PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC31705E07EF StrClemenN Citrus clementina cDNA clone C31705E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923481 ID=FC923481; Name=FC923481; organism=Citrus clementina; type=EST; length=402bp
GATGATGGAAAAATACCACATTGGTGAGATTGATAGCTCCAGTGTTCCAG
CAAAAAGGAAGTACACTCCACCCCAACAAGCAGTTAATAGTCCCGAAGAC
ACTGGATCTGCAGCAAAGATTCTACAGTTCCTGGTACCGATGTTGATCCT
GGGCATAGCATTTGCTTTCCGTTACTTTTCCAAGAAAGAAGAGTGAAGCA
TTGTATGAATTGCAAAACCGAACCAGATACCTCTTCGTTAGTTTACTACC
TATCCTATAGTATTAGAACTTCAATTGGCACTTGGTATCAGGATTTGTTT
TGATACTAAACTATGTGTAGCAATAATAATTGGTGCTTCGTGCATCCTCG
TTGAAGGATGTGATAAAAGTTATACTGAAGCAATAATACAGTGAAATTGA
AC
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