FC923546
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.147e-20 Identity = 63/159 (39.62%), Postives = 87/159 (54.72%), Query Frame = 1 Query: 271 DDDSSVEEPRSRARP-----CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARVLHD 729 +++ +EE R LYV NLP S S+L E+F GTV +VE+ + T SRG ++TMGS+ AK AI DGS VGGR ++V F + A I + FV +SPHKLYV NLSWA+ + LR+ F +SA+V++D Sbjct: 94 EEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYD 251
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.443e-17 Identity = 53/156 (33.97%), Postives = 78/156 (50.00%), Query Frame = 1 Query: 262 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARVLHD 729 +EV+ D EE + +L+V NLP D L +F+ G V EV N +T SRG G++TM ++ A+ A+ + DV GR + V N R E PP+ +E +++YVGN+ W + L F G VVSARV++D Sbjct: 118 DEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTV------NKAARRGERPERPPR---TFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYD 264
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.080e-15 Identity = 52/153 (33.99%), Postives = 81/153 (52.94%), Query Frame = 1 Query: 271 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARVLHD 729 D D VEE R+ + +++V NLP S D + L E+F+ G V VEV + TG SRG G++TM S + A +G ++ GR +RV R + + + ++S +++YVGNL+W V + L F G VV A+V++D Sbjct: 72 DGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENS--SFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYD 222
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15 Identity = 57/158 (36.08%), Postives = 79/158 (50.00%), Query Frame = 1 Query: 265 EVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARVLHD 729 +V D+ VE + + P E L+V NLP D +L +F G V EV N ET SRG G++TM ++ A+ A+ L+G D+ GR++ V + S R P+ F E ++YVGNL W V L F G VVSARV+ D Sbjct: 35 QVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER-------APRGDF--EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSD 183
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14 Identity = 53/157 (33.76%), Postives = 81/157 (51.59%), Query Frame = 1 Query: 271 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARVLHD 729 D D VEE R+ + +++V NL S D + L E+F+ G V VEV + TG SRG G++TM S + A +G ++ GR +RV NS R + + ++S +++YVGNL+W V + L F G VV A+V++D Sbjct: 72 DGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYD 228
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14 Identity = 49/154 (31.82%), Postives = 71/154 (46.10%), Query Frame = 1 Query: 268 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARVLHD 729 V + EE + + +L+V NLP D L ++F+ G V EV N ET SRG G++TM ++ A A+ D+ GR + V + SR A P +++YVGN+ W + L F G VVSARV+ D Sbjct: 81 VGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQP---------TYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFD 225
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14 Identity = 54/160 (33.75%), Postives = 77/160 (48.12%), Query Frame = 1 Query: 250 NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARVLHD 729 +V V + + EP A+ L+V NL + L +F+ GTV EV N ET SRG G++TM S++ A+ A+ + D+ GR + V + SR P + VYE ++YVGNL W V L F G VV ARV++D Sbjct: 131 DVSEGAVSERAEFPEPSEEAK---LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR---------PERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYD 278
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13 Identity = 53/172 (30.81%), Postives = 85/172 (49.42%), Query Frame = 1 Query: 265 EVDDDSSVE----EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-------------SPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARVLHD 729 EV++D + + +S + +L+V NLP + D ++L ++F+ G V VEV + TG SRG G++TM S++ + A +G ++ GR +RV R + P+ F S +++YVGNLSW V L + F G VV ARV++D Sbjct: 70 EVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKR---EDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYD 238
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11 Identity = 50/155 (32.26%), Postives = 80/155 (51.61%), Query Frame = 1 Query: 271 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARVLHD 729 D +S EE +A +YV NL D ++ E+FKPFG V SV + + E G SRG G++ + SA NA+ ++ ++ G+++ V + R + L + K+ Y+ + L+V NL ++ E L F FGT+ SARV+ D Sbjct: 226 DRESKFEE--MKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVN-LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVD 376
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11 Identity = 46/137 (33.58%), Postives = 75/137 (54.74%), Query Frame = 1 Query: 322 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS----IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARV 720 LYV N+PR+ + EL + + G + EV + +G SR G++TM ++ A I L+ +++GGR+++V + M+ T AE FV ESP+K+Y+GNL+ V E L++ F G V+ A+V Sbjct: 86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAE------DSQFV-ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKV 215 The following BLAST results are available for this feature:
BLAST of FC923546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923546 ID=FC923546; Name=FC923546; organism=Citrus clementina; type=EST; length=729bpback to top |