FC923546

Overview
NameFC923546
Unique NameFC923546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14493 contig Ccv1_Contig14493:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.147e-20
Identity = 63/159 (39.62%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  271 DDDSSVEEPRSRARP-----CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARVLHD 729
            +++  +EE   R          LYV NLP S   S+L E+F   GTV +VE+  +  T  SRG  ++TMGS+  AK AI   DGS VGGR ++V F  +          A I    + FV +SPHKLYV NLSWA+  + LR+ F      +SA+V++D
Sbjct:   94 EEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYD 251          
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.443e-17
Identity = 53/156 (33.97%), Postives = 78/156 (50.00%), Query Frame = 1
Query:  262 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARVLHD 729
            +EV+ D   EE +      +L+V NLP   D   L  +F+  G V   EV  N +T  SRG G++TM ++  A+ A+   +  DV GR + V      N   R  E    PP+    +E  +++YVGN+ W +    L   F   G VVSARV++D
Sbjct:  118 DEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTV------NKAARRGERPERPPR---TFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYD 264          
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.080e-15
Identity = 52/153 (33.99%), Postives = 81/153 (52.94%), Query Frame = 1
Query:  271 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARVLHD 729
            D D  VEE R+ +   +++V NLP S D + L E+F+  G V  VEV  +  TG SRG G++TM S    + A    +G ++ GR +RV        R  +  +     +    ++S +++YVGNL+W V  + L   F   G VV A+V++D
Sbjct:   72 DGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENS--SFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYD 222          
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 57/158 (36.08%), Postives = 79/158 (50.00%), Query Frame = 1
Query:  265 EVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARVLHD 729
            +V D+  VE  +  + P E   L+V NLP   D  +L  +F   G V   EV  N ET  SRG G++TM ++  A+ A+  L+G D+ GR++ V  +    S  R        P+  F  E   ++YVGNL W V    L   F   G VVSARV+ D
Sbjct:   35 QVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER-------APRGDF--EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSD 183          
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.348e-14
Identity = 53/157 (33.76%), Postives = 81/157 (51.59%), Query Frame = 1
Query:  271 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARVLHD 729
            D D  VEE R+ +   +++V NL  S D + L E+F+  G V  VEV  +  TG SRG G++TM S    + A    +G ++ GR +RV          NS  R   +     +    ++S +++YVGNL+W V  + L   F   G VV A+V++D
Sbjct:   72 DGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYD 228          
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 49/154 (31.82%), Postives = 71/154 (46.10%), Query Frame = 1
Query:  268 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARVLHD 729
            V +    EE +  +   +L+V NLP   D   L ++F+  G V   EV  N ET  SRG G++TM ++  A  A+      D+ GR + V  +    SR   A     P          +++YVGN+ W +    L   F   G VVSARV+ D
Sbjct:   81 VGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQP---------TYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFD 225          
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 54/160 (33.75%), Postives = 77/160 (48.12%), Query Frame = 1
Query:  250 NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARVLHD 729
            +V    V + +   EP   A+   L+V NL    +   L  +F+  GTV   EV  N ET  SRG G++TM S++ A+ A+   +  D+ GR + V  +    SR         P +   VYE   ++YVGNL W V    L   F   G VV ARV++D
Sbjct:  131 DVSEGAVSERAEFPEPSEEAK---LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR---------PERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYD 278          
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 53/172 (30.81%), Postives = 85/172 (49.42%), Query Frame = 1
Query:  265 EVDDDSSVE----EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-------------SPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARVLHD 729
            EV++D   +    + +S +   +L+V NLP + D ++L ++F+  G V  VEV  +  TG SRG G++TM S++  + A    +G ++ GR +RV        R    +     P+  F                S +++YVGNLSW V    L + F   G VV ARV++D
Sbjct:   70 EVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKR---EDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYD 238          
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 50/155 (32.26%), Postives = 80/155 (51.61%), Query Frame = 1
Query:  271 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARVLHD 729
            D +S  EE   +A    +YV NL    D ++  E+FKPFG V SV +  + E G SRG G++   +  SA NA+  ++  ++ G+++ V  +     R    + L    +  K+  Y+  + L+V NL  ++  E L   F  FGT+ SARV+ D
Sbjct:  226 DRESKFEE--MKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVN-LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVD 376          
BLAST of FC923546 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 46/137 (33.58%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  322 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS----IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFDRFGTVVSARV 720
            LYV N+PR+ +  EL  + +  G +   EV  +  +G SR  G++TM ++  A   I  L+ +++GGR+++V  +      M+  T  AE         FV ESP+K+Y+GNL+  V  E L++ F   G V+ A+V
Sbjct:   86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAE------DSQFV-ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKV 215          
The following BLAST results are available for this feature:
BLAST of FC923546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ROC5_NICSY2.147e-2039.6233 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY8.443e-1733.9731 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY2.080e-1533.9929 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_SPIOL3.547e-1536.0828 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC1_NICPL1.348e-1433.7630 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_NICSY3.003e-1431.8228 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH3.922e-1433.7531 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_ARATH9.660e-1330.81Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
PABP_PICGU2.379e-1132.26Polyadenylate-binding protein, cytoplasmic and nuc... [more]
RRP2_SPIOL4.059e-1133.5830S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
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Properties
Property NameValue
Genbank descriptionC31706C10EF StrClemenN Citrus clementina cDNA clone C31706C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923546 ID=FC923546; Name=FC923546; organism=Citrus clementina; type=EST; length=729bp
GAACGCTCATTCTTCTCAATGGCTGCCGCTACGGGCTTCTTAACAACTTC
TTCCTCTCTGTTCACAAAAATTACTCCTCCAGCTACACCAAAACGATTCG
GTTTTACCTCTCTGCCAACTTTAATTAATTTCCAGTACCCAAAGCTCTCA
TCTTGCTGGTCCCGCTCTCACCCAGCTGGGTTTCGCTCAGTTCTTGCGGT
GGTAGATGAGGAAGCGGTAGTAGTTGAAGATGAGATTAACGGCAAGGATA
ATGTTGGTGGAAACGAAGTGGACGACGACAGTTCAGTCGAAGAGCCAAGG
AGCCGCGCAAGGCCCTGTGAGTTATACGTGTGTAACTTGCCCAGGAGCTT
TGACATTTCAGAGCTTCTTGAGATGTTCAAGCCTTTTGGAACCGTTCTTT
CCGTTGAGGTTTCGAGGAATCCCGAAACAGGCATAAGTCGTGGATGCGGT
TACCTGACAATGGGTTCGATCAATTCAGCAAAAAATGCAATTATTGCATT
GGACGGATCTGATGTGGGTGGACGCGAAATGCGGGTGAGATTTTCAATTG
ATATGAATTCGCGGACTAGGAATGCTGAGGCATTGATTTCACCACCAAAG
AAGATTTTTGTCTATGAAAGCCCTCATAAATTATATGTTGGCAATCTTTC
CTGGGCTGTAAAACCTGAGGATTTGAGAAATCATTTTGACCGGTTTGGGA
CTGTGGTCAGTGCTAGAGTGTTGCACGAT
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