FC923547

Overview
NameFC923547
Unique NameFC923547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923547 vs. ExPASy Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.928e-65
Identity = 109/164 (66.46%), Postives = 129/164 (78.66%), Query Frame = 3
Query:  189 AFAGTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYXQHHHKSL 680
            +F GT QKC  C+KTVYLVDKL A+ R+YHKACFRCHHC  TLKL N+NSF+GV+YCR HFDQLFKRTGSL+KSF+GTPK  KPE+    E  +  ++S+ F GTR+KC  C   VYP E+V V+GT YH++CFKC HGGC ISPSNYIAHEGRLY +HHH  L
Sbjct:    3 SFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGSLEKSFDGTPKF-KPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQL 165          

HSP 2 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  174 NIMAAAFAGTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTGS 398
            N +++ F GT+ KC AC K VY ++++  D   YH+ACF+C H   T+   NY + EG LYC+ H  QLFK+ G+
Sbjct:   97 NRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGN 171          
BLAST of FC923547 vs. ExPASy Swiss-Prot
Match: XIRP2_MOUSE (Xin actin-binding repeat-containing protein 2 OS=Mus musculus GN=Xirp2 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.562e-19
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 3
Query:  186 AAFAGTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLDKSF 413
            +AF   ++ C+ C KTVY ++ L AD + +HK+CFRCHHC   L LGNY S  G +YC+PHF QLFK  G+ D+ F
Sbjct: 3248 SAFLSDKEICIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYDEGF 3323          
BLAST of FC923547 vs. ExPASy Swiss-Prot
Match: CSRP3_RAT (Cysteine and glycine-rich protein 3 OS=Rattus norvegicus GN=Csrp3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 53/169 (31.36%), Postives = 77/169 (45.56%), Query Frame = 3
Query:  198 GTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTG----------------SLDKSFEGTPKIAKPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLY 656
            G   KC ACDKTVY  +++  + R +HK CF C  C+  L      + E  +YC+  + + +   G                 L   F+ +PK A+          N +K S  FG + EKC  C  +VY  EKV   G P+HK+CF C+  G  +  +N    +G LY
Sbjct:    5 GGGAKCGACDKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRKYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSPKPARA-----ATTSNPSKFSAKFGES-EKCPRCGKSVYAAEKVMGGGKPWHKTCFPCAICGKSLESTNVTDKDGELY 167          
BLAST of FC923547 vs. ExPASy Swiss-Prot
Match: CSRP2_RAT (Cysteine and glycine-rich protein 2 OS=Rattus norvegicus GN=Csrp2 PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 49/165 (29.70%), Postives = 78/165 (47.27%), Query Frame = 3
Query:  198 GTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGT------------PKIAKPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLY 656
            G   KC AC +TVY  +++  D R +H+ CF C  C+  L        +  +YC+  + + +   G       GT            P+ A+P +P     PN +K +  +GG  EKC  C ++VY  EK+   G P+HK+CF+C+  G  +  +     EG +Y
Sbjct:    5 GGGNKCGACGRTVYHAEEVQCDGRTFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESAQPHRPTTN--PNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIY 166          
BLAST of FC923547 vs. ExPASy Swiss-Prot
Match: CSRP3_MOUSE (Cysteine and glycine-rich protein 3 OS=Mus musculus GN=Csrp3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 52/169 (30.77%), Postives = 78/169 (46.15%), Query Frame = 3
Query:  198 GTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTG----------------SLDKSFEGTPKIAKPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLY 656
            G   KC AC+KTVY  +++  + R +HK CF C  C+  L      + E  +YC+  + + +   G                 L   F+ +PK A+          N +K S  FG + EKC  C  +VY  EKV   G P+HK+CF+C+  G  +  +N    +G LY
Sbjct:    5 GGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSPKPARA-----ATTSNPSKFSAKFGES-EKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELY 167          
BLAST of FC923547 vs. ExPASy Swiss-Prot
Match: CSRP2_MOUSE (Cysteine and glycine-rich protein 2 OS=Mus musculus GN=Csrp2 PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 49/165 (29.70%), Postives = 78/165 (47.27%), Query Frame = 3
Query:  198 GTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGT------------PKIAKPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLY 656
            G   KC AC +TVY  +++  D R +H+ CF C  C+  L        +  +YC+  + + +   G       GT            P+ A+P +P     PN +K +  +GG  EKC  C ++VY  EK+   G P+HK+CF+C+  G  +  +     EG +Y
Sbjct:    5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESAQPHRPTTN--PNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIY 166          
BLAST of FC923547 vs. ExPASy Swiss-Prot
Match: CSRP3_HUMAN (Cysteine and glycine-rich protein 3 OS=Homo sapiens GN=CSRP3 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17
Identity = 51/169 (30.18%), Postives = 79/169 (46.75%), Query Frame = 3
Query:  198 GTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTG----------------SLDKSFEGTPKIAKPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLY 656
            G   KC AC+KTVY  +++  + R +HK CF C  C+  L      + E  +YC+  + + +   G                 L   F+ +PK   P + +    P+  K +  FG + EKC  C  +VY  EKV   G P+HK+CF+C+  G  +  +N    +G LY
Sbjct:    5 GGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPK---PARSVTTSNPS--KFTAKFGES-EKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELY 167          
BLAST of FC923547 vs. ExPASy Swiss-Prot
Match: CSRP2_HUMAN (Cysteine and glycine-rich protein 2 OS=Homo sapiens GN=CSRP2 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 48/165 (29.09%), Postives = 77/165 (46.67%), Query Frame = 3
Query:  198 GTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGT------------PKIAKPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLY 656
            G   KC AC +TVY  +++  D R +H+ CF C  C+  L        +  +YC+  + + +   G       GT            P+  +P +P     PN +K +  +GG  EKC  C ++VY  EK+   G P+HK+CF+C+  G  +  +     EG +Y
Sbjct:    5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTN--PNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIY 166          
BLAST of FC923547 vs. ExPASy Swiss-Prot
Match: CSRP2_BOVIN (Cysteine and glycine-rich protein 2 OS=Bos taurus GN=CSRP2 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 48/165 (29.09%), Postives = 77/165 (46.67%), Query Frame = 3
Query:  198 GTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGT------------PKIAKPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLY 656
            G   KC AC +TVY  +++  D R +H+ CF C  C+  L        +  +YC+  + + +   G       GT            P+  +P +P     PN +K +  +GG  EKC  C ++VY  EK+   G P+HK+CF+C+  G  +  +     EG +Y
Sbjct:    5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTN--PNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIY 166          
BLAST of FC923547 vs. ExPASy Swiss-Prot
Match: LIMD2_MOUSE (LIM domain-containing protein 2 OS=Mus musculus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 3
Query:  195 AGTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLDKSF 413
            A  ++ C AC KTVY +++L AD  I+H +CF C HC   L LG+Y +  G  YCRPHF QLFK  G+ D+ F
Sbjct:   35 AQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDEGF 107          
The following BLAST results are available for this feature:
BLAST of FC923547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SF3_HELAN1.928e-6566.46Pollen-specific protein SF3 OS=Helianthus annuus G... [more]
XIRP2_MOUSE3.562e-1951.32Xin actin-binding repeat-containing protein 2 OS=M... [more]
CSRP3_RAT2.553e-1731.36Cysteine and glycine-rich protein 3 OS=Rattus norv... [more]
CSRP2_RAT2.553e-1729.70Cysteine and glycine-rich protein 2 OS=Rattus norv... [more]
CSRP3_MOUSE3.334e-1730.77Cysteine and glycine-rich protein 3 OS=Mus musculu... [more]
CSRP2_MOUSE3.334e-1729.70Cysteine and glycine-rich protein 2 OS=Mus musculu... [more]
CSRP3_HUMAN7.427e-1730.18Cysteine and glycine-rich protein 3 OS=Homo sapien... [more]
CSRP2_HUMAN9.700e-1729.09Cysteine and glycine-rich protein 2 OS=Homo sapien... [more]
CSRP2_BOVIN9.700e-1729.09Cysteine and glycine-rich protein 2 OS=Bos taurus ... [more]
LIMD2_MOUSE1.267e-1649.32LIM domain-containing protein 2 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionC31706C11EF StrClemenN Citrus clementina cDNA clone C31706C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923547 ID=FC923547; Name=FC923547; organism=Citrus clementina; type=EST; length=682bp
GAAATGATTCACAAACTTTAATCATCTACAGACAACTCTGCTTTCTTTTG
GTCTCCGCAATCCCCTCCCCTGCAACTCACATTTCCTTATCTTCTCCTCT
TGCTATTTCTTGCTATTAGAATTTAGTTGCATTTTTTCTGTTAGCAGAGT
TGAGAATTCATCAAAAACAAATTAATATTATGGCAGCAGCATTTGCAGGG
ACACAACAGAAATGCATGGCTTGTGACAAGACTGTGTATCTGGTTGATAA
GCTAACAGCTGACAATCGTATCTATCATAAAGCCTGCTTCAGATGCCACC
ACTGCAAAGGAACCCTCAAGCTTGGCAACTACAATTCTTTTGAGGGAGTT
CTATACTGCAGGCCACACTTTGATCAACTATTTAAGAGAACCGGCAGTCT
TGACAAAAGCTTTGAAGGGACACCAAAGATTGCAAAGCCAGAGAAACCCA
TTGATGGCGAGAAACCTAATGTCGCTAAAGTTTCAACTATGTTTGGTGGA
ACCAGAGAAAAGTGTGTTGGCTGTAAGAACACTGTCTATCCAACGGAGAA
GGTTTCGGTTAATGGCACTCCTTATCACAAGAGCTGCTTCAAATGCAGTC
ATGGAGGTTGTGTGATTAGCCCATCCAACTACATTGCACATGAGGGCAGA
CTCTATTGNCAACATCACCATAAATCACTCAT
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