FC923548
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2) HSP 1 Score: 262.692 bits (670), Expect = 1.675e-69 Identity = 120/206 (58.25%), Postives = 161/206 (78.16%), Query Frame = 1 Query: 1 ESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENXQ 618 E+RITGR+R+PYHYLLSLYGS+G K+E+YRVW++Y+SV P + NLGYHA++SSL R+GDIEG EK++EEWL VKSSYDPRI NL+M+ YVK + AE F+ ++E GGKP+S++WE LA GH R+R I EAL+CL+ AF+AEG+ +WRPK + + FFK CEEESD+ SKEA + LLRQ G ++K Y++LI + + N + Sbjct: 302 EARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAFSAEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGDLEDKSYLALIDVDENRTVNNSE 507
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 5.103e-26 Identity = 61/200 (30.50%), Postives = 107/200 (53.50%), Query Frame = 1 Query: 1 ESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEA 600 E + +R+ Y +L++LY S+G KE V R+W + +SV ++ + Y ++SSL + GD+E E++F EW + +YD R++N+++ YV+ G KAE+ ++E GG PN +WE L EG ++ + +A+ + F WRP V+ + E+E + A+V L + G Y L+ + + A Sbjct: 276 EKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCENMEKAIDAMHQVFVLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLGLASLPLYRLLLRMHEHA 475
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.308e-25 Identity = 60/183 (32.79%), Postives = 95/183 (51.91%), Query Frame = 1 Query: 1 ESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFA---AEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLR 540 E + T RD Y +L++LYG +GK EVYR+W R P +N+ Y MI L ++ D+ G E +F+EW + S+YD RI N+++ Y +EG KA GGK N+ +WE + +++ + AL C+ A + +G K W P P V E++ D+ E + +L+ Sbjct: 256 EMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGKGDGGK-WLPSPETVRALMSYFEQKKDVNGAENLLEILK 437
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.144e-24 Identity = 62/173 (35.84%), Postives = 102/173 (58.96%), Query Frame = 1 Query: 34 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGY 552 Y L+S YG+ GKKEEVYR+W+LY+ + G N GY ++IS+L ++ DIE +EKI EEW + S +D RI +L+++ Y K+G +KAE N ++++ ++++WE LA G+ ++ +A+ K A WRP V +++ E + DM + LL + G+ Sbjct: 284 YEVLMSFYGAAGKKEEVYRLWSLYKEL-DGFYNTGYISVISALLKMDDIEEVEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKMEKAVEKWKRAIEV-SKPGWRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSERGH 454
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.784e-21 Identity = 55/194 (28.35%), Postives = 103/194 (53.09%), Query Frame = 1 Query: 1 ESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLI 582 E ++ ++RV Y L+SL+ ++G K+ V W +S F + + Y +MIS++ ++G+ E + +++EW SV + D RI NL+++ Y+ E F+ I+E+G P+ ++WE L +++ + + + L C A + K W V K EE+ ++ E + LL++ GY + Y SL+ Sbjct: 293 EKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCF--GKAIDSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQLYNSLL 484
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.943e-21 Identity = 56/181 (30.94%), Postives = 92/181 (50.83%), Query Frame = 1 Query: 1 ESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAE-GAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLR 540 E+R+ +D Y++L++LY +GKK EV R+W+L + V N Y ++ SL +I + E++ EW S + YD R+ N ++ Y+ + +KAEA + G SWE +A + + + A C+K A E G++ WRP V + +E + E+FVA LR Sbjct: 259 ENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLR 439
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.878e-20 Identity = 54/168 (32.14%), Postives = 93/168 (55.36%), Query Frame = 1 Query: 34 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALL 537 YH+L++LY + EVYRVW+L + +P V N Y M+ +L+++ DI+G++K+F EW S +YD R+AN+ +S Y+K+ +++AEA FN +++ S + + L ++ + AL + A + K+W + +FF EE D+ E F L Sbjct: 284 YHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQADLALKHFEAA-VLDQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTL 450
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.184e-20 Identity = 55/181 (30.39%), Postives = 96/181 (53.04%), Query Frame = 1 Query: 1 ESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF--AAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALL 537 E ++ +R +H+L+SLY + K EVYRVW + P V NL Y M+ +++++GD++G++KIF EW S +YD R+AN+ ++ Y+K +++AE + +++ P S + + L + + A+ L+ A +AE W V FF E+ D+ E F +L Sbjct: 305 EEKMNPNNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKIL 485
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PPR61_ARATH (Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 2.011e-14 Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 1 Query: 34 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNS 312 Y +L+ LYG G +EEV RVW LY+S N GY +I SL ++ DI G E+I++ W S+ +D RI ++ S Y G +KAE NS Sbjct: 283 YDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFDHRIPTMLASGYRDRGMTEKAEKLMNS 375
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PPR19_ARATH (Pentatricopeptide repeat-containing protein At1g07590, mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.982e-14 Identity = 53/192 (27.60%), Postives = 94/192 (48.96%), Query Frame = 1 Query: 1 ESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKS------WRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRK 558 E ITG + L+ LYG +GK++E+ R WN+ R F V + Y + AR+G+++ E+++ E +VK + N ++S Y K+G +KA F + G KPNS ++ LA G + + + EAL ++ + +KS W +++I F E+ D+ + E ++ Y + Sbjct: 298 EKSITGDNWSTLDILMILYGRLGKEKELARTWNVIRG-FHHVRSKSYLLATEAFARVGNLDRAEELWLEMKNVKGLKETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLMKEALKNIEMGLNLKTSKSIGSSTPWLETTLSIIECF---AEKGDVENSEKLFEEVKNAKYNR 485 The following BLAST results are available for this feature:
BLAST of FC923548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923548 ID=FC923548; Name=FC923548; organism=Citrus clementina; type=EST; length=789bpback to top |