FC923548

Overview
NameFC923548
Unique NameFC923548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PPR3_ARATH (Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 1.675e-69
Identity = 120/206 (58.25%), Postives = 161/206 (78.16%), Query Frame = 1
Query:    1 ESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEAVAENXQ 618
            E+RITGR+R+PYHYLLSLYGS+G K+E+YRVW++Y+SV P + NLGYHA++SSL R+GDIEG EK++EEWL VKSSYDPRI NL+M+ YVK    + AE  F+ ++E GGKP+S++WE LA GH R+R I EAL+CL+ AF+AEG+ +WRPK + +  FFK CEEESD+ SKEA + LLRQ G  ++K Y++LI + +     N +
Sbjct:  302 EARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAFSAEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGDLEDKSYLALIDVDENRTVNNSE 507          
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.103e-26
Identity = 61/200 (30.50%), Postives = 107/200 (53.50%), Query Frame = 1
Query:    1 ESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLIGLTDEA 600
            E  +   +R+ Y +L++LY S+G KE V R+W + +SV   ++ + Y  ++SSL + GD+E  E++F EW +   +YD R++N+++  YV+ G   KAE+    ++E GG PN  +WE L EG ++   + +A+  +   F       WRP    V+   +  E+E  +    A+V  L + G      Y  L+ + + A
Sbjct:  276 EKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCENMEKAIDAMHQVFVLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHRLGLASLPLYRLLLRMHEHA 475          
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.308e-25
Identity = 60/183 (32.79%), Postives = 95/183 (51.91%), Query Frame = 1
Query:    1 ESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFA---AEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLR 540
            E + T RD   Y +L++LYG +GK  EVYR+W   R   P  +N+ Y  MI  L ++ D+ G E +F+EW +  S+YD RI N+++  Y +EG   KA          GGK N+ +WE   + +++   +  AL C+  A +    +G K W P P  V       E++ D+   E  + +L+
Sbjct:  256 EMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIGKGDGGK-WLPSPETVRALMSYFEQKKDVNGAENLLEILK 437          
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.144e-24
Identity = 62/173 (35.84%), Postives = 102/173 (58.96%), Query Frame = 1
Query:   34 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGY 552
            Y  L+S YG+ GKKEEVYR+W+LY+ +  G  N GY ++IS+L ++ DIE +EKI EEW +  S +D RI +L+++ Y K+G  +KAE   N ++++    ++++WE LA G+    ++ +A+   K A        WRP  V +++     E + DM      + LL + G+
Sbjct:  284 YEVLMSFYGAAGKKEEVYRLWSLYKEL-DGFYNTGYISVISALLKMDDIEEVEKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKMEKAVEKWKRAIEV-SKPGWRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSERGH 454          
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.784e-21
Identity = 55/194 (28.35%), Postives = 103/194 (53.09%), Query Frame = 1
Query:    1 ESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRKEKDYMSLI 582
            E  ++ ++RV Y  L+SL+ ++G K+ V   W   +S F  + +  Y +MIS++ ++G+ E  + +++EW SV  + D RI NL+++ Y+        E F+  I+E+G  P+ ++WE L   +++ + + + L C     A +  K W      V    K  EE+ ++   E  + LL++ GY   + Y SL+
Sbjct:  293 EKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCF--GKAIDSVKKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQLYNSLL 484          
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PP334_ARATH (Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.943e-21
Identity = 56/181 (30.94%), Postives = 92/181 (50.83%), Query Frame = 1
Query:    1 ESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAE-GAKSWRPKPVNVINFFKACEEESDMGSKEAFVALLR 540
            E+R+  +D   Y++L++LY  +GKK EV R+W+L + V     N  Y  ++ SL +I  +   E++  EW S  + YD R+ N ++  Y+ +   +KAEA    +   G      SWE +A  +  +  +  A  C+K A   E G++ WRP    V +      +E  +   E+FVA LR
Sbjct:  259 ENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLR 439          
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PP300_ARATH (Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.878e-20
Identity = 54/168 (32.14%), Postives = 93/168 (55.36%), Query Frame = 1
Query:   34 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALL 537
            YH+L++LY  +    EVYRVW+L +  +P V N  Y  M+ +L+++ DI+G++K+F EW S   +YD R+AN+ +S Y+K+  +++AEA FN  +++     S + + L    ++  +   AL   + A   +  K+W      + +FF   EE  D+   E F   L
Sbjct:  284 YHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQADLALKHFEAA-VLDQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTL 450          
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PPR4_ARATH (Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.184e-20
Identity = 55/181 (30.39%), Postives = 96/181 (53.04%), Query Frame = 1
Query:    1 ESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAF--AAEGAKSWRPKPVNVINFFKACEEESDMGSKEAFVALL 537
            E ++   +R  +H+L+SLY  + K  EVYRVW   +   P V NL Y  M+ +++++GD++G++KIF EW S   +YD R+AN+ ++ Y+K   +++AE   +  +++   P S + + L    +   +   A+  L+ A   +AE    W      V  FF   E+  D+   E F  +L
Sbjct:  305 EEKMNPNNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKIL 485          
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PPR61_ARATH (Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.011e-14
Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 1
Query:   34 YHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNS 312
            Y +L+ LYG  G +EEV RVW LY+S      N GY  +I SL ++ DI G E+I++ W S+   +D RI  ++ S Y   G  +KAE   NS
Sbjct:  283 YDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFDHRIPTMLASGYRDRGMTEKAEKLMNS 375          
BLAST of FC923548 vs. ExPASy Swiss-Prot
Match: PPR19_ARATH (Pentatricopeptide repeat-containing protein At1g07590, mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.982e-14
Identity = 53/192 (27.60%), Postives = 94/192 (48.96%), Query Frame = 1
Query:    1 ESRITGRDRVPYHYLLSLYGSVGKKEEVYRVWNLYRSVFPGVTNLGYHAMISSLARIGDIEGMEKIFEEWLSVKSSYDPRIANLMMSWYVKEGNFDKAEAFFNSIIEEGGKPNSTSWETLAEGHIRERRILEALSCLKGAFAAEGAKS------WRPKPVNVINFFKACEEESDMGSKEAFVALLRQPGYRK 558
            E  ITG +      L+ LYG +GK++E+ R WN+ R  F  V +  Y     + AR+G+++  E+++ E  +VK   +    N ++S Y K+G  +KA   F  +   G KPNS ++  LA G  + + + EAL  ++     + +KS      W    +++I  F    E+ D+ + E     ++   Y +
Sbjct:  298 EKSITGDNWSTLDILMILYGRLGKEKELARTWNVIRG-FHHVRSKSYLLATEAFARVGNLDRAEELWLEMKNVKGLKETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLMKEALKNIEMGLNLKTSKSIGSSTPWLETTLSIIECF---AEKGDVENSEKLFEEVKNAKYNR 485          
The following BLAST results are available for this feature:
BLAST of FC923548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PPR3_ARATH1.675e-6958.25Pentatricopeptide repeat-containing protein At1g02... [more]
PP400_ARATH5.103e-2630.50Pentatricopeptide repeat-containing protein At5g27... [more]
PPR86_ARATH3.308e-2532.79Pentatricopeptide repeat-containing protein At1g60... [more]
PP166_ARATH2.144e-2435.84Pentatricopeptide repeat-containing protein At2g20... [more]
PP302_ARATH3.784e-2128.35Pentatricopeptide repeat-containing protein At4g02... [more]
PP334_ARATH4.943e-2130.94Pentatricopeptide repeat-containing protein At4g21... [more]
PP300_ARATH1.878e-2032.14Pentatricopeptide repeat-containing protein At4g01... [more]
PPR4_ARATH4.184e-2030.39Pentatricopeptide repeat-containing protein At1g02... [more]
PPR61_ARATH2.011e-1441.94Putative pentatricopeptide repeat-containing prote... [more]
PPR19_ARATH9.982e-1427.60Pentatricopeptide repeat-containing protein At1g07... [more]
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Properties
Property NameValue
Genbank descriptionC31706C12EF StrClemenN Citrus clementina cDNA clone C31706C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923548 ID=FC923548; Name=FC923548; organism=Citrus clementina; type=EST; length=789bp
GAGAGTAGAATTACTGGTCGGGATAGGGTACCATACCACTATCTCTTAAG
TCTATACGGCAGTGTTGGTAAAAAAGAGGAGGTGTATAGGGTGTGGAATC
TTTACAGATCAGTTTTTCCTGGTGTTACAAATTTGGGGTACCATGCCATG
ATCTCTTCTTTGGCTAGGATTGGGGATATTGAAGGGATGGAAAAGATATT
CGAGGAGTGGTTGTCAGTAAAGTCATCTTATGACCCTAGGATAGCAAATC
TTATGATGAGCTGGTATGTTAAAGAAGGGAATTTTGATAAGGCTGAGGCT
TTCTTTAATAGCATAATTGAAGAGGGAGGAAAGCCAAACTCAACTTCATG
GGAAACTCTTGCCGAAGGGCATATCAGAGAGAGGAGGATTCTGGAGGCTT
TGTCTTGCTTGAAGGGAGCTTTTGCAGCTGAGGGAGCCAAGAGTTGGAGG
CCGAAGCCTGTAAATGTCATTAACTTTTTCAAGGCTTGTGAGGAAGAATC
TGATATGGGAAGCAAGGAGGCCTTTGTAGCATTGTTAAGACAACCGGGTT
ACCGTAAAGAGAAAGATTATATGTCACTCATTGGCTTAACTGATGAAGCT
GTTGCTGAAAATAANCAGAAGAATGATGAAGACAGTGATGAAGATTCTGA
AATGCTTCTCAGCCAACTGCAGTTTGCAGAATAGCCTGTTTTATATACAT
ATAAAGCCTTCATTTGAGCCCAACCTGGAAGTTTTACAGTAGCATTATGT
TTCAAGTGCTTTCTCTGCTCACACTGTCACAGCGTCAGA
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