FC923557

Overview
NameFC923557
Unique NameFC923557
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1339..2017. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923557 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 389.037 bits (998), Expect = 1.193e-107
Identity = 198/227 (87.22%), Postives = 205/227 (90.31%), Query Frame = 2
Query:    2 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMD-GSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAY 679
            ILKVHGSNKKFD DVSL+VIAMRTPGFSG              GRRG+ AISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTL+PRGQARGLTWFIP DDPTLIS+QQLFARIVGGLGGRAAEE+IFG PEVTTGAAGDLQQITGLAKQMV TFGMS+IGPWSLMD G+QSGDVIMRMMARNSMSEKLAEDID AVKRLSD AY
Sbjct:  392 ILKVHGSNKKFDTDVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGRTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLIPRGQARGLTWFIPMDDPTLISRQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDIGPWSLMDSGAQSGDVIMRMMARNSMSEKLAEDIDTAVKRLSDEAY 618          
BLAST of FC923557 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 374.015 bits (959), Expect = 3.973e-103
Identity = 191/226 (84.51%), Postives = 197/226 (87.17%), Query Frame = 2
Query:    2 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAY 679
            ILKVH  NKKF++ VSL+VIAMRTPGFSG              GRRGK AISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHD VQKVTL+PRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFG  EVTTGA  DLQQITGLAKQMVTTFGMSEIGPWSLMD S+  DVIMRMMARNSMSEKLA DID AVK LSD+AY
Sbjct:  398 ILKVHSGNKKFESGVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGESEVTTGAVSDLQQITGLAKQMVTTFGMSEIGPWSLMDSSEQSDVIMRMMARNSMSEKLANDIDTAVKTLSDKAY 623          
BLAST of FC923557 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 372.859 bits (956), Expect = 8.850e-103
Identity = 187/226 (82.74%), Postives = 198/226 (87.61%), Query Frame = 2
Query:    2 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAY 679
            ILKVH  NKKFD DVSL++IAMRTPGFSG              GRR + +ISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHA+CGTLTPGHD VQKVTL+PRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEE+IFG  EVTTGA GDLQQITGLA+QMVTTFGMS+IGPWSLMD S   DVIMRMMARNSMSEKLAEDID+AVK+LSD AY
Sbjct:  405 ILKVHAGNKKFDNDVSLEIIAMRTPGFSGADLANLLNEAAILAGRRARTSISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAVCGTLTPGHDAVQKVTLIPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGDSEVTTGAVGDLQQITGLARQMVTTFGMSDIGPWSLMDSSAQSDVIMRMMARNSMSEKLAEDIDSAVKKLSDSAY 630          
BLAST of FC923557 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 6.579e-90
Identity = 166/227 (73.13%), Postives = 187/227 (82.38%), Query Frame = 2
Query:    2 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGS-QSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAY 679
            ILKVH  +KK D DVSL VIAMRTPGFSG              GRRGK  I+  EIDDSIDRIVAGMEGT M DGKSK++VAYHEVGHAIC TLT GHDPVQKVTLVPRGQARGLTWF+P +DPTL+SKQQLFARIVGGLGGRAAE+VIFG PE+TTGAAGDLQQ+T +A+QMVT FGMSEIGPW+L D + +  DV++RM+ARNSMSEKLAEDID+ VK++   AY
Sbjct:  402 ILKVHSRSKKLDKDVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGKDKITLTEIDDSIDRIVAGMEGTKMIDGKSKAIVAYHEVGHAICATLTEGHDPVQKVTLVPRGQARGLTWFLPGEDPTLVSKQQLFARIVGGLGGRAAEDVIFGEPEITTGAAGDLQQVTEIARQMVTMFGMSEIGPWALTDPAVKQNDVVLRMLARNSMSEKLAEDIDSCVKKIIGDAY 628          
BLAST of FC923557 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 2.860e-85
Identity = 157/228 (68.86%), Postives = 185/228 (81.14%), Query Frame = 2
Query:    2 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIP-SDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMD-GSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAY 679
            IL VHG+NK+ D  VSL V+AMRTPGFSG              GRRGK  I+  EIDDSIDRIVAG+EGT MTDGKSK LVAYHE+GHA+C TLT GHD VQKVTL+PRGQARGLTWF+P  +DP L+S+QQ+FA IVGGLGGRAAEEV+FG PEVTTGAAGDLQQ+T +A++MVT FGMSEIGPW+L +  +Q GDV++RM+AR+SMSE+LA DIDAAV+ + D AY
Sbjct:  400 ILLVHGANKRLDPGVSLAVVAMRTPGFSGADLANLMNEAAILAGRRGKDRITVSEIDDSIDRIVAGLEGTSMTDGKSKMLVAYHEIGHAVCATLTAGHDEVQKVTLIPRGQARGLTWFLPGEEDPALVSRQQIFAGIVGGLGGRAAEEVVFGEPEVTTGAAGDLQQVTRVARRMVTAFGMSEIGPWALAEPAAQGGDVVLRMLARSSMSERLAADIDAAVRTIVDEAY 627          
BLAST of FC923557 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.974e-66
Identity = 133/228 (58.33%), Postives = 160/228 (70.18%), Query Frame = 2
Query:    2 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAY 679
            IL+VH  NKK +  VSL+ IA RTPGFSG               RR K A++  EID SIDR+VAGMEGT + D KSK L+AYHEVGHAI G+L   HDPVQKVTL+PRGQARGLTWF PSDD +LIS+ Q+ ARIVG LGGRAAEE+IFG  EVTTGA+ DLQQ+T +A+QMVT FGMS+IGP SL   SQ GD  +   M   +  S+++A +ID  V+ +    Y
Sbjct:  351 ILEVHAKNKKMEPKVSLETIARRTPGFSGADLANLLNEAAILTARRRKNAMTMSEIDTSIDRVVAGMEGTPLIDSKSKRLIAYHEVGHAIIGSLLEHHDPVQKVTLIPRGQARGLTWFTPSDDQSLISRSQILARIVGALGGRAAEEIIFGDAEVTTGASNDLQQVTSMARQMVTRFGMSKIGPLSL--ESQGGDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECY 576          
BLAST of FC923557 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.652e-66
Identity = 128/226 (56.64%), Postives = 158/226 (69.91%), Query Frame = 2
Query:    2 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAY 679
            IL+VH  NKK ++ VSL+ IA RTPGFSG               RR K+A++  EID SIDR+VAG+EGT + D KSK L+AYHEVGHAI G+L   HDPVQKVTL+PRGQARGLTWF PSDD +LIS+ Q+ ARIVG LGGRAAEE+IFG  EVTTGA+ DLQQ+T +A+QMVT FGMS+IGP SL        +   M   +  S+++A +ID  V+ +    Y
Sbjct:  351 ILEVHAKNKKMESKVSLETIARRTPGFSGADLANLLNEAAILTARRRKSAMTMSEIDTSIDRVVAGLEGTPLIDSKSKRLIAYHEVGHAIIGSLLEHHDPVQKVTLIPRGQARGLTWFTPSDDQSLISRSQILARIVGALGGRAAEEIIFGDAEVTTGASNDLQQVTSMARQMVTRFGMSKIGPLSLESQGSDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECY 576          
BLAST of FC923557 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.288e-65
Identity = 129/228 (56.58%), Postives = 163/228 (71.49%), Query Frame = 2
Query:    2 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAY 679
            IL+VH  NKK   +VS+D IA RTPGFSG               RR K+AI+  EIDD++DR+VAGMEGT + D KSK L+AYHEVGHAI GTL   HDPVQKVTL+PRGQA+GLTWF P+++  L +K QL ARI G +GGRAAEE +FG  EVTTGA GDLQQ+T +A+QMVT FGMS +GP SL   S  G+V +   +M R+  SE++A  IDA V++L+++ +
Sbjct:  350 ILEVHARNKKLAPEVSIDSIARRTPGFSGADLANLLNEAAILTARRRKSAITLLEIDDAVDRVVAGMEGTPLVDSKSKRLIAYHEVGHAIVGTLLKDHDPVQKVTLIPRGQAQGLTWFTPNEEQGLTTKAQLMARIAGAMGGRAAEEEVFGDDEVTTGAGGDLQQVTEMARQMVTRFGMSNLGPISL--ESSGGEVFLGGGLMNRSEYSEEVATRIDAQVRQLAEQGH 575          
BLAST of FC923557 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.632e-64
Identity = 129/222 (58.11%), Postives = 154/222 (69.37%), Query Frame = 2
Query:    2 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSM-SEKLAEDIDAAVKRL 664
            IL VH  NKK D  +SL++IA RTPGFSG               RR K  I+  EID SIDR++AGMEG  + D K+K L+AYHEVGHAI GTL   HDPVQKVTLVPRGQA+GLTWF PS+D +LIS+ Q+ ARI+G LGGRAAEEV+FG PEVTTGA  DLQQ+T +A+QMVT FGMS IGP SL +   S   + R M  +S  SE +A  ID  V+ +
Sbjct:  351 ILNVHARNKKLDLSISLELIAKRTPGFSGADLANLLNEAAILTARRRKKQITISEIDASIDRVIAGMEGKALVDSKTKRLIAYHEVGHAIIGTLLKHHDPVQKVTLVPRGQAKGLTWFTPSEDQSLISRSQILARIMGALGGRAAEEVVFGLPEVTTGAGNDLQQVTSMARQMVTRFGMSNIGPLSL-ESQNSDPFLGRTMGSSSQYSEDIASRIDMQVRAI 571          
BLAST of FC923557 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.095e-60
Identity = 113/226 (50.00%), Postives = 152/226 (67.26%), Query Frame = 2
Query:    2 ILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAY 679
            ILKVH   KK   DV L+VIA RTPGFSG               RRGK  I+ KEI+DSID+I+AG+EG+ + D + K L+AYHE GHA+  T  P HDPVQKVTL+PR QA+GLTWF+P+DD  L+SK Q+ ++I+  L GRA EE++FG PEVT GAA D++Q+T +A+QMVT FGMS++GP  L + S    +   +M R+ +SE++   +D  V+ +    Y
Sbjct:  349 ILKVHSKKKKIHKDVLLEVIARRTPGFSGADLANLLNEAAILTVRRGKVEITMKEIEDSIDKIIAGLEGSPLADSRIKRLIAYHEAGHAVAATFLPHHDPVQKVTLIPRRQAKGLTWFLPNDDQFLVSKSQILSKIIAALAGRAMEEIVFGLPEVTIGAANDIKQVTFMARQMVTKFGMSKVGPICLENSSSEVFIGRDLMGRHELSEEMVAKVDLEVRSILKDCY 574          
The following BLAST results are available for this feature:
BLAST of FC923557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
FTSH2_ORYSJ1.193e-10787.22Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH8_ARATH3.973e-10384.51Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH2_ARATH8.850e-10382.74Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH6_ARATH6.579e-9073.13Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH6_ORYSJ2.860e-8568.86Cell division protease ftsH homolog 6, chloroplast... [more]
FSTH_PORYE2.974e-6658.33Cell division protease ftsH homolog OS=Porphyra ye... [more]
FTSH_PORPU8.652e-6656.64Cell division protease ftsH homolog OS=Porphyra pu... [more]
FTSH1_SYNY33.288e-6556.58Cell division protease ftsH homolog 1 OS=Synechocy... [more]
FTSH_GUITH1.632e-6458.11Cell division protease ftsH homolog OS=Guillardia ... [more]
FTSH_CYACA1.095e-6050.00Cell division protease ftsH homolog OS=Cyanidium c... [more]

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Properties
Property NameValue
Genbank descriptionC31706D11EF StrClemenN Citrus clementina cDNA clone C31706D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923557 ID=FC923557; Name=FC923557; organism=Citrus clementina; type=EST; length=679bp
GATATTAAAGGTTCACGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTC
TTGATGTGATAGCCATGAGAACACCTGGGTTCAGTGGTGCTGACCTTGCA
AACCTCCTAAATGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGC
TATTTCATCTAAAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAA
TGGAAGGAACTGTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATAC
CATGAAGTTGGCCACGCAATATGCGGAACTTTGACTCCTGGACACGATCC
CGTTCAAAAAGTCACCCTTGTTCCACGTGGTCAGGCAAGGGGTCTTACCT
GGTTCATCCCTTCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTT
GCAAGAATTGTTGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTT
TGGAGGGCCTGAAGTGACAACAGGAGCAGCTGGTGATTTGCAGCAGATCA
CTGGTTTGGCCAAACAGATGGTAACCACATTTGGAATGTCTGAAATTGGC
CCATGGTCGCTCATGGACGGATCACAGAGTGGTGATGTCATCATGAGAAT
GATGGCAAGGAACTCAATGTCTGAGAAGCTTGCTGAAGACATTGATGCTG
CAGTCAAGAGACTATCAGACCGTGCCTAT
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