FC923564

Overview
NameFC923564
Unique NameFC923564
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length776
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923564 vs. ExPASy Swiss-Prot
Match: FOLD_GEOTN (Bifunctional protein folD OS=Geobacillus thermodenitrificans (strain NG80-2) GN=folD PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.180e-53
Identity = 112/201 (55.72%), Postives = 137/201 (68.16%), Query Frame = 3
Query:   78 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSSLLLKADATVTIVRSHTPDPESIVR 680
            A II G  +A+TIR+E+A+EV  L    G  PGLAV++VG    S SYV  K+KACAEVGI+S     P  +SE EL++K+ ELNA P VHGILVQLPLP HI E  V+  I+ EKDVDGFHP+N+GK+ +    P FLPCTP G L ++K +G+ I GK  VVVGRSNIVG PV  L L+  ATVT   S TPD  +I R
Sbjct:    3 AQIISGTELAKTIRAELADEVAKLKAN-GIEPGLAVILVGDDPASHSYVKGKQKACAEVGIRSLLYTFPATISEEELLAKIQELNADPTVHGILVQLPLPAHIREWSVIETIAPEKDVDGFHPINVGKMMI--GQPAFLPCTPHGVLVMVKSAGIDIAGKHVVVVGRSNIVGKPVGQLFLREHATVTYAHSKTPDLAAITR 200          
BLAST of FC923564 vs. ExPASy Swiss-Prot
Match: FOLD_MAGSM (Bifunctional protein folD OS=Magnetococcus sp. (strain MC-1) GN=folD PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.054e-52
Identity = 111/201 (55.22%), Postives = 136/201 (67.66%), Query Frame = 3
Query:   78 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSSLLLKADATVTIVRSHTPDPESIVR 680
            A +IDGKA+AQ++R E+  EV  L   +   PGLAVV+VG    SQ YV  K++AC   GI SF  +L    S+AEL++ + +LN    VHGILVQLPLPKHI+E+KVL  IS  KD DGFHP N+G+L     DP F PCTP G +E+LK SGV  KGK AVV+GRSNIVG PV+ +LL A ATVTI  S TPD    V+
Sbjct:    2 AHVIDGKAIAQSVREELRMEVERLKLNHQLTPGLAVVLVGADPASQVYVRNKKRACETAGIASFSHELAATTSQAELLALIEQLNQDDAVHGILVQLPLPKHIDEQKVLEAISPSKDADGFHPYNVGRLVT--GDPTFQPCTPWGVMEMLKVSGVDPKGKHAVVIGRSNIVGKPVALMLLAAHATVTICHSRTPDLAETVK 200          
BLAST of FC923564 vs. ExPASy Swiss-Prot
Match: FOLD_LISMO (Bifunctional protein folD OS=Listeria monocytogenes GN=folD PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.348e-52
Identity = 110/199 (55.28%), Postives = 144/199 (72.36%), Query Frame = 3
Query:   84 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSSLLLKADATVTIVRSHTPDPESIVR 680
            IIDGK +A+ I+ ++  EV  L  K GK PGLAVV+VG  + S++YV  K+K   E G+KS  I+LPE V+E +L+S V ELN    +HGILVQLPLP+HI+EEKV+  IS +KDVDGFHP+N+G L + G+D  F+PCTP G +EL+K +G  I+GKRAVV+GRSNIVG PV+ LLL  +ATVTI  S T D   + +
Sbjct:    4 IIDGKKLAKEIQEKVTREVAELV-KEGKQPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISFDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAK 199          
BLAST of FC923564 vs. ExPASy Swiss-Prot
Match: FOLD_LISMH (Bifunctional protein folD OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=folD PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.067e-52
Identity = 110/199 (55.28%), Postives = 144/199 (72.36%), Query Frame = 3
Query:   84 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSSLLLKADATVTIVRSHTPDPESIVR 680
            IIDGK +A+ I+ ++  EV  L  K GK PGLAVV+VG  + S++YV  K+K   E G+KS  I+LPE V+E +L+S V ELN    +HGILVQLPLP+HI+EEKV+  IS +KDVDGFHP+N+G L + G+D  F+PCTP G +EL+K +G  I+GKRAVV+GRSNIVG PV+ LLL  +ATVTI  S T D   + +
Sbjct:    4 IIDGKKLAKEIQEKVTREVAELV-KEGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAK 199          
BLAST of FC923564 vs. ExPASy Swiss-Prot
Match: FOLD_LISMC (Bifunctional protein folD OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=folD PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.067e-52
Identity = 110/199 (55.28%), Postives = 144/199 (72.36%), Query Frame = 3
Query:   84 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSSLLLKADATVTIVRSHTPDPESIVR 680
            IIDGK +A+ I+ ++  EV  L  K GK PGLAVV+VG  + S++YV  K+K   E G+KS  I+LPE V+E +L+S V ELN    +HGILVQLPLP+HI+EEKV+  IS +KDVDGFHP+N+G L + G+D  F+PCTP G +EL+K +G  I+GKRAVV+GRSNIVG PV+ LLL  +ATVTI  S T D   + +
Sbjct:    4 IIDGKKLAKEIQEKVTREVAELV-KEGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAK 199          
BLAST of FC923564 vs. ExPASy Swiss-Prot
Match: FOLD_LISIN (Bifunctional protein folD OS=Listeria innocua GN=folD PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.067e-52
Identity = 110/199 (55.28%), Postives = 143/199 (71.86%), Query Frame = 3
Query:   84 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSSLLLKADATVTIVRSHTPDPESIVR 680
            IIDGK +A+ I+ ++  EV  L  K GK PGLAVV+VG  + S++YV  K+K   E G+KS  I+LPE V+E +L+  V ELN    +HGILVQLPLPKHI+EEKV+  IS +KDVDGFHP+N+G L + G+D  F+PCTP G +EL+K +G  I+GKRAVV+GRSNIVG PV+ LLL  +ATVTI  S T D   + +
Sbjct:    4 IIDGKKLAKEIQEKVTSEVAELV-KQGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPETVTEEKLLKVVEELNEDNTIHGILVQLPLPKHISEEKVIDAISFDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAK 199          
BLAST of FC923564 vs. ExPASy Swiss-Prot
Match: FOLD_LISMF (Bifunctional protein folD OS=Listeria monocytogenes serotype 4b (strain F2365) GN=folD PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.832e-52
Identity = 110/199 (55.28%), Postives = 144/199 (72.36%), Query Frame = 3
Query:   84 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSSLLLKADATVTIVRSHTPDPESIVR 680
            IIDGK +A+ I+ ++  EV  L  K GK PGLAVV+VG  + S++YV  K+K   E G+KS  I+LPE V+E +L+S V ELN    +HGILVQLPLP+HI+EEKV+  IS +KDVDGFHP+N+G L + G+D  F+PCTP G +EL+K +G  I+GKRAVV+GRSNIVG PV+ LLL  +ATVTI  S T D   + +
Sbjct:    4 IIDGKKLAKEIQEKVTREVAELV-KEGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLIENATVTIAHSRTKDLPQVAK 199          
BLAST of FC923564 vs. ExPASy Swiss-Prot
Match: FOLD_GEOUR (Bifunctional protein folD OS=Geobacter uraniireducens (strain Rf4) GN=folD PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.165e-51
Identity = 110/195 (56.41%), Postives = 136/195 (69.74%), Query Frame = 3
Query:   78 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSSLLLKADATVTIVRSHTPD 662
            A IIDGKA+A  IR EI  EV  L+ K G  PGLAVV+VG    S+ YVSMK KAC +VGI S +  LP   SEA+L+  +H+LN+ P +HGIL+QLPLPK I+ EKVL  IS EKD DGFHP N+G+L +    PLF PCTP G + +LK +GV + GK  VVVGRSNIVG PV+ + L+ +ATVT+  S T D
Sbjct:    2 AKIIDGKAIAAKIRGEITAEVAKLASK-GVTPGLAVVLVGEDPASKVYVSMKEKACKDVGIFSDEYKLPVDTSEADLLLLIHKLNSDPKIHGILIQLPLPKQIDTEKVLEAISPEKDADGFHPYNVGRLVI--GKPLFQPCTPYGVMVMLKEAGVELAGKEVVVVGRSNIVGKPVAFMCLQQNATVTLCHSKTRD 193          
BLAST of FC923564 vs. ExPASy Swiss-Prot
Match: FOLD_LISW6 (Bifunctional protein folD OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=folD PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.784e-51
Identity = 108/199 (54.27%), Postives = 142/199 (71.36%), Query Frame = 3
Query:   84 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSSLLLKADATVTIVRSHTPDPESIVR 680
            IIDG+ +A+ I+  +  EV  L+ K  K PGLAVV+VG  + S++YV  K+K   E G+KS  I+LPE VSE +L+  V ELN    +HGILVQLPLPKHI+EEKV+  IS +KDVDGFHP+N+G L + G+D  F+PCTP G +EL+K +G  I+GKRAVV+GRSNIVG PV+ LLL  +ATVTI  S T +   + +
Sbjct:    4 IIDGEKLAKEIQERVTTEVAELA-KIDKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPETVSEEKLLEVVEELNTDDTIHGILVQLPLPKHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKNLPEVAK 199          
BLAST of FC923564 vs. ExPASy Swiss-Prot
Match: FOLD_LYSSC (Bifunctional protein folD OS=Lysinibacillus sphaericus (strain C3-41) GN=folD PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.896e-50
Identity = 103/201 (51.24%), Postives = 144/201 (71.64%), Query Frame = 3
Query:   78 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSSLLLKADATVTIVRSHTPDPESIVR 680
            + II+GK + Q IR+ +AE V  L E+ G  PGLAVV+VG  + S +YV  K+K+C  +G+ S  I LPE+  + EL++++ +LN   D+HGILVQLPLPKHI+E+ V+  I++EKDVDGF P+++GK+ M G++  FLPCTP G ++LL+ SG+ I GK AV+VGRS+IVG P+  LLL+ DATVT   S TPD  S  +
Sbjct:    3 SAIINGKEIGQEIRNAVAERVIRLKEQ-GLTPGLAVVLVGDNQASATYVRNKQKSCEAIGMYSELIKLPEETKQEELLTQIQQLNQREDIHGILVQLPLPKHIDEDTVIATIAVEKDVDGFSPVSVGKM-MLGQE-TFLPCTPFGVMKLLEYSGIEIAGKHAVIVGRSHIVGKPMGQLLLQKDATVTYTHSKTPDLPSFTK 200          
The following BLAST results are available for this feature:
BLAST of FC923564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_GEOTN6.180e-5355.72Bifunctional protein folD OS=Geobacillus thermoden... [more]
FOLD_MAGSM1.054e-5255.22Bifunctional protein folD OS=Magnetococcus sp. (st... [more]
FOLD_LISMO2.348e-5255.28Bifunctional protein folD OS=Listeria monocytogene... [more]
FOLD_LISMH3.067e-5255.28Bifunctional protein folD OS=Listeria monocytogene... [more]
FOLD_LISMC3.067e-5255.28Bifunctional protein folD OS=Listeria monocytogene... [more]
FOLD_LISIN3.067e-5255.28Bifunctional protein folD OS=Listeria innocua GN=f... [more]
FOLD_LISMF6.832e-5255.28Bifunctional protein folD OS=Listeria monocytogene... [more]
FOLD_GEOUR1.165e-5156.41Bifunctional protein folD OS=Geobacter uraniireduc... [more]
FOLD_LISW65.784e-5154.27Bifunctional protein folD OS=Listeria welshimeri s... [more]
FOLD_LYSSC4.896e-5051.24Bifunctional protein folD OS=Lysinibacillus sphaer... [more]

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Properties
Property NameValue
Genbank descriptionC31706E08EF StrClemenN Citrus clementina cDNA clone C31706E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923564 ID=FC923564; Name=FC923564; organism=Citrus clementina; type=EST; length=776bp
GGAAGGGTGAGTGAGCAATTAATTAGAGTTATCAAATCTCTAGTTCTAGA
ATAATGGCGGCACCGTCAGATCAGAAGGCCACCATAATCGACGGCAAAGC
CGTCGCTCAGACCATCCGATCTGAAATCGCAGAAGAAGTCCGCCTCCTTT
CTGAAAAATATGGCAAGGTGCCTGGACTGGCAGTAGTAATAGTGGGTGGC
AGAAAAGACTCTCAAAGCTATGTGAGCATGAAGAGAAAGGCTTGTGCTGA
AGTTGGGATTAAGTCTTTTGACATAGACCTCCCCGAGCAAGTCTCCGAGG
CCGAGCTTATCAGCAAGGTTCACGAGCTTAACGCAATGCCTGATGTACAT
GGTATATTGGTTCAACTTCCATTGCCGAAGCATATAAATGAAGAGAAAGT
TTTAGGTGAGATAAGCCTTGAGAAGGATGTTGATGGCTTTCATCCTTTGA
ACATTGGCAAGCTCGCAATGAAAGGCAGAGACCCCCTCTTCCTTCCTTGC
ACGCCCAAGGGATGCCTTGAACTTCTGAAACGAAGTGGTGTTACTATAAA
GGGTAAAAGGGCTGTTGTGGTGGGTCGAAGTAACATTGTTGGACTCCCAG
TTTCATCGCTGCTGCTGAAAGCTGATGCCACTGTAACCATAGTCCGTTCA
CATACCCCTGATCCTGAAAGTATCGTTCGTGAAGCTGACATTGTTATTGC
TGCAGCCGGACAAGCATGATGATCAGGGGAAGTGGGATCAGCTGGTGCTG
CTGTTATTGATGTGAACAATGCTGTC
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