FC923570

Overview
NameFC923570
Unique NameFC923570
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923570 vs. ExPASy Swiss-Prot
Match: RPAB2_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus GN=Polr2f PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.020e-30
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 2
Query:  263 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 493
            R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127          
BLAST of FC923570 vs. ExPASy Swiss-Prot
Match: RPAB2_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus GN=Polr2f PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.020e-30
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 2
Query:  263 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 493
            R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127          
BLAST of FC923570 vs. ExPASy Swiss-Prot
Match: RPAB2_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Pongo abelii GN=POLR2F PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.556e-30
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 2
Query:  263 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 493
            R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127          
BLAST of FC923570 vs. ExPASy Swiss-Prot
Match: RPAB2_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Homo sapiens GN=POLR2F PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.556e-30
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 2
Query:  263 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 493
            R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127          
BLAST of FC923570 vs. ExPASy Swiss-Prot
Match: RPAB2_CRIGR (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Cricetulus griseus GN=POLR2F PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.556e-30
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 2
Query:  263 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 493
            R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127          
BLAST of FC923570 vs. ExPASy Swiss-Prot
Match: RPAB2_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Bos taurus GN=POLR2F PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.556e-30
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 2
Query:  263 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 493
            R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127          
BLAST of FC923570 vs. ExPASy Swiss-Prot
Match: RPAB2_YEAST (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Saccharomyces cerevisiae GN=RPO26 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.491e-29
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 2
Query:  263 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 490
            R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL E+KIP  IRRYLPDGS+EDW V+ELIV+
Sbjct:   79 RATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVD 154          
BLAST of FC923570 vs. ExPASy Swiss-Prot
Match: RPAB2_DROME (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Drosophila melanogaster GN=RpII18 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.467e-29
Identity = 59/78 (75.64%), Postives = 71/78 (91.03%), Query Frame = 2
Query:  263 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDS 496
            R T+KYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+++KIP  IRRYLPD SYEDW +DELI+ D+
Sbjct:   54 RITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVDN 131          
BLAST of FC923570 vs. ExPASy Swiss-Prot
Match: RPAB2_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Schizosaccharomyces pombe GN=rpb6 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.615e-28
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 2
Query:  263 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 484
            R T+ YMTKYERARILGTRALQISMNAPV+V+LEGETDPL+IAMKEL ++KIP  +RRYLPDGSYEDW V ELI
Sbjct:   69 RTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQKKIPLLVRRYLPDGSYEDWSVAELI 142          
BLAST of FC923570 vs. ExPASy Swiss-Prot
Match: RPAB2_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc2 OS=Dictyostelium discoideum GN=polr2f PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.597e-28
Identity = 58/75 (77.33%), Postives = 68/75 (90.67%), Query Frame = 2
Query:  263 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 487
            RKT++YMTKYERAR+LG+RALQISMNAP+MVELEGETDPL+IA KELR +KIP  IRR+LP+G YEDW VDEL +
Sbjct:   59 RKTTRYMTKYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIIRRFLPNGMYEDWSVDELSI 133          
The following BLAST results are available for this feature:
BLAST of FC923570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RPAB2_RAT5.020e-3083.12DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB2_MOUSE5.020e-3083.12DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB2_PONAB6.556e-3083.12DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB2_HUMAN6.556e-3083.12DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB2_CRIGR6.556e-3083.12DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB2_BOVIN6.556e-3083.12DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB2_YEAST2.491e-2981.58DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB2_DROME9.467e-2975.64DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB2_SCHPO1.615e-2881.08DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB2_DICDI3.597e-2877.33DNA-directed RNA polymerases I, II, and III subuni... [more]

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Properties
Property NameValue
Genbank descriptionC31706F04EF StrClemenN Citrus clementina cDNA clone C31706F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923570 ID=FC923570; Name=FC923570; organism=Citrus clementina; type=EST; length=725bp
GGGGGTTTAGGAGCCGGGTAGCAGAAGCACATCGCCTGAATTCTTATTTA
ATAAACTCGACCGGCGACCAAAGAAACTCGAGTAGTCCACAATGGCCGAC
GAAGACTACAATGATTTGGACATGGGATACGAGGATGAGCCGCCAGAGCC
TGAAATTGAAGAAGGCGCAGAGGAGGATGCAGAAAACATCAACAATGATG
ACATCAATGGAGAGCCTATTGAGACCGAGGAAAAGGAGGAGCAGGAGCAG
AAAGAAGCAGCTCGGAAAACTTCCAAGTACATGACTAAATACGAGCGTGC
CAGAATATTGGGTACCCGAGCTCTGCAAATCAGTATGAATGCTCCTGTGA
TGGTTGAGTTGGAGGGGGAGACCGACCCACTTGAGATTGCTATGAAGGAG
CTACGCGAGCGGAAAATTCCCTTCACAATCCGTCGCTACCTCCCTGATGG
AAGTTATGAAGATTGGGGAGTCGATGAATTGATTGTTGAAGATTCGTGGA
AGAGACAAGTGGGTGGTGATTAATCGGTTATGGTCTTGGGATAAATCTTT
TTTTAAAGAATGCGTCTATGGTAATTAATGGTCAAATGTAACATTTGTTG
ACCCATCACCATGAGCTGAACAGTCGAAACTTAGATATGTATTAGTACTT
GATTTTTGGATGCCTTCGATTGTAAACAAATGAATGTGCGTGGATGGTTA
AGCAGGGATATTGTTTGTTCTTTTC
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