FC923572

Overview
NameFC923572
Unique NameFC923572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC923572 vs. ExPASy Swiss-Prot
Match: SPCS1_ARATH (Probable signal peptidase complex subunit 1 OS=Arabidopsis thaliana GN=At2g22425 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.683e-22
Identity = 47/80 (58.75%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:   70 MDWQGQKLAEHLMQIXXXXXXXXXXXTGYIMGSFQMMILIYAGGXXXXXXXXXPNWPFFNRHPLKWLDPSEAEKHPKPQL 309
            MDWQGQKL E LMQI            GY   SF+ M+LIYAGG         PNWPF+N HPLKWLDPSEAEKHPKP++
Sbjct:    1 MDWQGQKLVEQLMQILLVISGVVAVVVGYTTESFRTMMLIYAGGVVLTTLVTVPNWPFYNLHPLKWLDPSEAEKHPKPEV 80
The following BLAST results are available for this feature:
BLAST of FC923572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SPCS1_ARATH9.683e-2258.75Probable signal peptidase complex subunit 1 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC31706F06EF StrClemenN Citrus clementina cDNA clone C31706F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923572 ID=FC923572; Name=FC923572; organism=Citrus clementina; type=EST; length=516bp
GGAGCCTCTAACTATTAGTTTCTTGCGTTCGGGCACATTTCCGCTCTCCA
CTTGACTCTTCGTATCACGATGGATTGGCAAGGGCAAAAATTAGCGGAGC
ATCTGATGCAAATTTTGTTGTTGGCATTCGCTGTAGTGGCATTTGCTACT
GGTTACATAATGGGATCATTTCAGATGATGATTTTGATATATGCTGGCGG
GGTTGTTCTCACCACACTGGTAACTGTGCCAAACTGGCCTTTCTTTAATC
GCCATCCTCTGAAGTGGTTGGATCCAAGCGAGGCTGAAAAACATCCCAAG
CCTCAGCTGGCTGTCAACTCGAAGAAAAAATCTGTTAAGAAAAATTGACT
TATCAGGTGTTAGCATTTGGTAGGAACTTCTTTACTTTTTTGTTGTGGCT
GTGGTCTTCTTAAAAGAGGATGATACAGTGCACTGGCTTGCTTGCCCAAC
AGCTTGAATTTATAGACAATGATAGAAACAATTCGCTCTTCAAAAAAAAA
AAAAAAAAAAAAAAAA
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