FC923595

Overview
NameFC923595
Unique NameFC923595
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923595 vs. ExPASy Swiss-Prot
Match: Y305_SYNY3 (TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803) GN=slr0305 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-24
Identity = 44/107 (41.12%), Postives = 69/107 (64.49%), Query Frame = 1
Query:  121 FIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVAASVAFLIARYFARERILKLVEGNKKFLAIDKAIGENGFRVVTLLRLSPLLPFS 441
            +I+G G      F+ +Y    ++ +P   LT+ AG++FG + G+I V I  T+ A+ AFL+ RY AR  + K + GN+KF AID+A+G+ G ++V L RLSP+ PF+
Sbjct:   11 WIDGLGTWAAIAFMLLYTVATVVFLPGSILTLGAGVVFGVILGSIYVFIGATLGATAAFLVGRYLARGWVAKKIAGNQKFKAIDEAVGKEGLKIVILTRLSPVFPFN 117          

HSP 2 Score: 40.817 bits (94), Expect = 1.366e-24
Identity = 25/85 (29.41%), Postives = 39/85 (45.88%), Query Frame = 2
Query:  437 SLGNYLYGLTSVKFVPYVLGSWLGMLPGTWAYVSAGAFGRAIIQEESEVXXXXXXXXXXXXXXXXXXXXXXXXYVTRLAKDAVKD 691
            +L NY YG+T+V    YV+GS LGM+PGT  YV  G+   ++    +                          YVT++A+ A+ +
Sbjct:  117 NLLNYAYGITNVSLKDYVIGS-LGMIPGTIMYVYIGSLAGSLATLGTATNQANPTLQWTIRIVGFIATVAVTIYVTKIARKALNE 200          
BLAST of FC923595 vs. ExPASy Swiss-Prot
Match: YDJX_ECOLI (TVP38/TMEM64 family membrane protein ydjX OS=Escherichia coli (strain K12) GN=ydjX PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.429e-18
Identity = 39/113 (34.51%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  103 LTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVAASVAFLIARYFARERILKLVEGNKKFLAIDKAIGENGFRVVTLLRLSPLLPFS 441
            L      I   G  GY+L++ ++    +L +P   L ++ G++FG + GT++  I+ T+A+S +FL+AR+  R+ +LK V  +  F AI+K I  NG   + L RL PL P++
Sbjct:   33 LPHLQTLIRQSGFFGYSLYILLFIIATLLLLPGSILVIAGGIVFGPLLGTLLSLIAATLASSCSFLLARWLGRDLLLKYVGHSNTFQAIEKGIARNGIDFLILTRLIPLFPYN 145          

HSP 2 Score: 34.6538 bits (78), Expect = 4.429e-18
Identity = 16/33 (48.48%), Postives = 21/33 (63.64%), Query Frame = 2
Query:  434 HSLGNYLYGLTSVKFVPYVLGSWLGMLPGTWAY 532
            +++ NY YGLT++ F PY L S L  LPG   Y
Sbjct:  144 YNIQNYAYGLTTIAFWPYTLISALTTLPGIVIY 176          
The following BLAST results are available for this feature:
BLAST of FC923595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y305_SYNY31.366e-2441.12TVP38/TMEM64 family membrane protein slr0305 OS=Sy... [more]
YDJX_ECOLI4.429e-1834.51TVP38/TMEM64 family membrane protein ydjX OS=Esche... [more]
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Properties
Property NameValue
Genbank descriptionC31706H06EF StrClemenN Citrus clementina cDNA clone C31706H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923595 ID=FC923595; Name=FC923595; organism=Citrus clementina; type=EST; length=717bp
ACTGCTGTTAAAGGCTCCATCTTGGCAGGTGTTTTGCTTTTGGTTGTTGT
TGGTGGGTTTGGTACCATGGGGTATGTTTATAAGGATCAGATTAATGCGT
TTTTGACCCAGTTTTCTGGGTTTATTGAAGGTTATGGCCCAGCTGGATAT
GCTTTATTTGTGGCAGTTTATGCTGGATTGGAGATTCTTGCGATTCCTGC
AATTCCATTGACCATGTCAGCTGGACTTCTATTTGGTTCTGTAACTGGCA
CCATCATAGTATCCATCAGTGGAACTGTGGCAGCAAGTGTTGCATTTTTG
ATTGCCCGATATTTCGCTCGTGAACGCATCCTCAAACTAGTCGAAGGAAA
CAAAAAGTTTCTTGCAATTGACAAAGCAATTGGAGAAAATGGCTTCAGGG
TTGTTACACTTCTTCGTTTGAGTCCTTTGCTTCCATTCTCTGGGGAATTA
TTTGTATGGATTGACATCTGTAAAGTTTGTACCATATGTTCTGGGAAGTT
GGTTGGGGATGCTTCCAGGAACGTGGGCTTATGTGAGTGCCGGAGCTTTT
GGGCGAGCAATTATTCAAGAAGAGTCCGAGGTTGGCTTACCTGGAGGAAA
TGGTCAGCTTTTGACTCTTGGGCTGGGATTATTGTTCACAGCCTTGGCTG
CTGCATACGTAACACGGCTGGCAAAGGATGCTGTAAAGGATATTGAATAG
ACACGATCGAATTAAGT
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