FC923604

Overview
NameFC923604
Unique NameFC923604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7062 contig Ccv1_Contig7062:194..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923604 vs. ExPASy Swiss-Prot
Match: BI1L_ARATH (BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.399e-39
Identity = 78/157 (49.68%), Postives = 112/157 (71.34%), Query Frame = 2
Query:   17 QLRWAFIRKIYSIIAIQLLATIXXXXXXXXXRPISHFFSSTGAGLALYIVLIITPFIVLCPLYYYYQKHPVNYLLLGVFTIALSFAVGLTCAYTKGEVILESAILTAVVVISLTLYTFWAARRGHDFNFLGPFLFGAVMVLLVFAFIQILFPLGRIS 487
            QLRW FIRK+Y I++ QLL T           P++   + +  G+ L+  L I PFI++ PL+ Y+QKHPVN +LL +FT++LSF VG++CA T+G ++L++ ILT  VV SLT YTFWAA++G DF+FLGP LF ++++L+V +FIQ+ FPLG  S
Sbjct:   44 QLRWGFIRKVYGILSAQLLLTTLISAVVVLNPPVNDLLTGS-PGILLF--LCIVPFILIWPLHIYHQKHPVNLILLALFTVSLSFTVGVSCAMTEGRIVLQALILTLSVVGSLTAYTFWAAKKGKDFSFLGPILFTSLIILVVTSFIQMFFPLGPTS 197          
BLAST of FC923604 vs. ExPASy Swiss-Prot
Match: TMBI4_MOUSE (Transmembrane BAX inhibitor motif-containing protein 4 OS=Mus musculus GN=Tmbim4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.058e-12
Identity = 45/155 (29.03%), Postives = 77/155 (49.68%), Query Frame = 2
Query:    5 SESPQLRWAFIRKIYSIIAIQLLATIXXXXXXXXXRPISHFFSSTGAGLALYIVLIITPFIVLCPLYYYYQKHPVNYLLLGVFTIALSFAVGLTCAYTKGEVILESAILTAVVVISLTLYTFWAARRGHDFNFLGPFLFGAVMVLLVFAFIQILF 469
            S S  +R AF+RK+YSI+++Q+L T          + +  F   + A   L +V  +    ++  L  +   HP+N  LL  FT++ S AV     +    ++L++ I+T  V + LT YT  + R   DF   G  LF  + +L +  F+++ F
Sbjct:   25 SASVHIRMAFLRKVYSILSLQVLLTTVTSALFLYFQALRTFVHESPA---LIVVFALGSLGLIFALTLHRHTHPLNLYLLFAFTLSESLAVAAVVTFYDVYLVLQAFIMTTAVFLGLTAYTLQSKR---DFTKFGAGLFAGLWILCLAGFLKLFF 173          
BLAST of FC923604 vs. ExPASy Swiss-Prot
Match: TMBI1_HUMAN (Transmembrane BAX inhibitor motif-containing protein 1 OS=Homo sapiens GN=TMBIM1 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 36/118 (30.51%), Postives = 64/118 (54.24%), Query Frame = 2
Query:   17 QLRWAFIRKIYSIIAIQLLATIXXXXXXXXXRPISHFFSSTGAGLALYIVLIITPFIVLCPLYYYYQKHPVNYLLLGVFTIALSFAVGLTCAYTKGEVILESAILTAVVVISLTLYTF 370
            ++R  FIRK+YSII++QLL T+          P+S F     A   +   + +  +++L       ++ P N +LL +FT A+ F  G   +  + + ++ + I+TAVV IS+T++ F
Sbjct:   93 KVRHTFIRKVYSIISVQLLITVAIIAIFTFVEPVSAFVRRNVAVYYVSYAVFVVTYLILACCQGPRRRFPWNIILLTLFTFAMGFMTGTISSMYQTKAVIIAMIITAVVSISVTIFCF 210          
The following BLAST results are available for this feature:
BLAST of FC923604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BI1L_ARATH4.399e-3949.68BI1-like protein OS=Arabidopsis thaliana GN=At4g15... [more]
TMBI4_MOUSE2.058e-1229.03Transmembrane BAX inhibitor motif-containing prote... [more]
TMBI1_HUMAN5.068e-1130.51Transmembrane BAX inhibitor motif-containing prote... [more]
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Properties
Property NameValue
Genbank descriptionC31707A03EF StrClemenN Citrus clementina cDNA clone C31707A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923604 ID=FC923604; Name=FC923604; organism=Citrus clementina; type=EST; length=489bp
GATGTCGGAGAGTCCGCAGCTCCGGTGGGCCTTTATTCGCAAAATCTATT
CGATCATAGCCATCCAATTACTGGCGACGATCGCGGTAGCATCCGTCGTG
GTTTCGGTGCGTCCGATTTCACACTTCTTTTCGAGTACCGGGGCCGGCCT
TGCTCTCTATATTGTGCTAATAATCACGCCTTTCATTGTGTTGTGTCCGT
TGTATTACTATTACCAGAAGCATCCAGTGAATTATCTTTTACTTGGAGTT
TTCACCATCGCTCTTTCGTTTGCGGTGGGTTTGACGTGTGCTTACACCAA
AGGGGAGGTTATTCTGGAATCTGCAATATTGACGGCTGTGGTGGTTATTT
CACTCACTCTCTACACTTTCTGGGCTGCACGAAGAGGCCATGATTTCAAC
TTTCTTGGGCCTTTCTTGTTTGGTGCTGTAATGGTCCTGCTGGTTTTTGC
TTTTATTCAGATTCTATTTCCATTGGGTAGGATTTCTGT
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