FC923615
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RK13_ARATH (50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=1 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 3.364e-70 Identity = 137/217 (63.13%), Postives = 159/217 (73.27%), Query Frame = 2 Query: 53 MATLCTPTCVIFXXXXXXXXXXXXFKTLNTGTTISSSITPFLGFSVASAKSTSP-----LNTKRSFKVRC----CQNLSLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 MA LC+ + VI + + ++ S +PFLGFS+ + S N+KR +V+C SLVP NQRWMF++ E NGPDIWN TWYPKA+DH ++DK W+VVDATDKILGRLASTIA HIRGKNLA+YTPSVDMGA+VIVVNAEKVAVSGKKR QK+YRRHSGRPGGM ETFDQLQ RIPERI+EHAVRGMLPKGRL Sbjct: 1 MAVLCSSSTVIL-------------SSSSVKSSGSERKSPFLGFSLTAISKPSVRVGIYANSKRGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRL 204
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RK13_SPIOL (50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea GN=RPL13 PE=1 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 2.112e-64 Identity = 127/185 (68.65%), Postives = 146/185 (78.92%), Query Frame = 2 Query: 146 TTISSSITPFLGFSVA-SAKSTSPLNTK-----RSFKVRCCQNLSL--VPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 T + S P + +VA SA+ ++ +TK R K + ++ VP +QRWMF E GPDIWN TWYPK+ADH +DK WYVVDATD ILGR+ASTIAIHIRGKNLA+YTPSVDMGA+VIVVNA+KVAVSGKKRTQK+YRRHSGRPGG+KEETFDQLQ RIPERIIEHAVRGMLPKGRL Sbjct: 29 TPVLSFPRPTVAAAVAVSARKSTSASTKCTEEWRQLKEAVKKEFAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRL 213
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ANAVT (50S ribosomal protein L13 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplM PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.524e-38 Identity = 77/103 (74.76%), Postives = 89/103 (86.41%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ WYVVDATDK LGRLAS IA+ +RGKN A YTP +D G +VIVVNAEKVAV+GKKRTQK+YRRHSGRPGGMK ETF +LQ R+PERI+EHAV+GMLPK L Sbjct: 13 ERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVVNAEKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ANASP (50S ribosomal protein L13 OS=Anabaena sp. (strain PCC 7120) GN=rplM PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.435e-38 Identity = 76/103 (73.79%), Postives = 89/103 (86.41%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ WYVVDATDK LGRLAS IA+ +RGKN A YTP +D G +VIVVNA+KVAV+GKKRTQK+YRRHSGRPGGMK ETF +LQ R+PERI+EHAV+GMLPK L Sbjct: 13 ERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVVNAKKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_FREDI (50S ribosomal protein L13 OS=Fremyella diplosiphon GN=rplM PE=3 SV=2) HSP 1 Score: 155.606 bits (392), Expect = 2.201e-37 Identity = 73/103 (70.87%), Postives = 88/103 (85.44%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ WY+VDATD+ LGRLAS IA+ +RGK A YTP +D G +VIV+NAEK+AV+GKKRTQK+YRRHSGRPGGMK ETF +LQ RIPERI+EHAV+GMLPK L Sbjct: 13 EREWYIVDATDQRLGRLASEIAMVLRGKKKAEYTPHLDTGDFVIVINAEKIAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRIPERIVEHAVKGMLPKNSL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_CYAP4 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplM PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 6.404e-37 Identity = 78/117 (66.67%), Postives = 91/117 (77.78%), Query Frame = 2 Query: 326 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 N T+ P + WYVVDAT++ LGRLA+ IA+ +RGK YTPS+D G +VIVVNAEKVAV+GKKRTQKIYRRHSGRPGGMK ETF +LQ R+PERIIEHAV+GMLPK L Sbjct: 2 NKTYLPSTTS---LEPKWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVVNAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPKNTL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_THEEB (50S ribosomal protein L13 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplM PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.427e-36 Identity = 74/100 (74.00%), Postives = 85/100 (85.00%), Query Frame = 2 Query: 377 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 WYV+DA D+ LGRLA+ IA +RGKN A YTP +D G +VIV+NAEKV V+GKKR+QK+YRRHSGRPGGMK ETFDQLQ RIPERIIEHAV+GMLPK L Sbjct: 19 WYVIDAADQRLGRLAAEIARILRGKNKAIYTPHMDTGDFVIVINAEKVTVTGKKRSQKLYRRHSGRPGGMKIETFDQLQARIPERIIEHAVKGMLPKNSL 118
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_MICAN (50S ribosomal protein L13 OS=Microcystis aeruginosa (strain NIES-843) GN=rplM PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.208e-35 Identity = 71/103 (68.93%), Postives = 87/103 (84.47%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 ++ WYV+DA D+ LGRLA+ IA+ +RGKN AT+TP +D G +VIV+NAEKV V+GKKR QK+YRR SGRPGGMK E+FD+LQ RIPERIIEHAV+GMLPK L Sbjct: 13 EQKWYVIDAADQRLGRLATEIAMILRGKNKATFTPHLDTGDFVIVINAEKVTVTGKKRQQKVYRRDSGRPGGMKVESFDKLQKRIPERIIEHAVKGMLPKNSL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_CYAP8 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 8801) GN=rplM PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 2.691e-35 Identity = 69/103 (66.99%), Postives = 86/103 (83.50%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 D+ WYV+DA D+ LGRLAS +A +RGKN T+TP +D G +VI+VNAEKV V+GKK +QK+YRRHSGRPGGMK ETF++LQ R+PERI+EHAV+GMLPK L Sbjct: 13 DQKWYVIDAADQRLGRLASEVAQILRGKNKPTFTPHMDTGDFVIIVNAEKVVVTGKKSSQKLYRRHSGRPGGMKVETFEKLQARLPERIVEHAVKGMLPKNSL 115
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_CYAA5 (50S ribosomal protein L13 OS=Cyanothece sp. (strain ATCC 51142) GN=rplM PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 2.691e-35 Identity = 70/103 (67.96%), Postives = 86/103 (83.50%), Query Frame = 2 Query: 368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676 D+ WYV+DATD+ LGRLA +A +RGKN TYTP +D G +VI++NA+KVAV+G+K TQK+YRRHSGRPGGMK ETF++LQ RIPERIIE AV+GMLPK L Sbjct: 13 DQKWYVIDATDQRLGRLACEVAKILRGKNKPTYTPHMDTGDFVIIINADKVAVTGRKSTQKLYRRHSGRPGGMKIETFEKLQQRIPERIIEKAVKGMLPKNAL 115 The following BLAST results are available for this feature:
BLAST of FC923615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923615 ID=FC923615; Name=FC923615; organism=Citrus clementina; type=EST; length=678bpback to top |