FC923615

Overview
NameFC923615
Unique NameFC923615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923615_ssr100 microsatellite FC923615_ssr100:100..111. BLAST: Citrus ESTs to Prunus persica proteins V1
FC923615_ssr112 microsatellite FC923615_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14507 contig Ccv1_Contig14507:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RK13_ARATH (50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.364e-70
Identity = 137/217 (63.13%), Postives = 159/217 (73.27%), Query Frame = 2
Query:   53 MATLCTPTCVIFXXXXXXXXXXXXFKTLNTGTTISSSITPFLGFSVASAKSTSP-----LNTKRSFKVRC----CQNLSLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            MA LC+ + VI               + +  ++ S   +PFLGFS+ +    S       N+KR  +V+C        SLVP NQRWMF++ E NGPDIWN TWYPKA+DH ++DK W+VVDATDKILGRLASTIA HIRGKNLA+YTPSVDMGA+VIVVNAEKVAVSGKKR QK+YRRHSGRPGGM  ETFDQLQ RIPERI+EHAVRGMLPKGRL
Sbjct:    1 MAVLCSSSTVIL-------------SSSSVKSSGSERKSPFLGFSLTAISKPSVRVGIYANSKRGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRL 204          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RK13_SPIOL (50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea GN=RPL13 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.112e-64
Identity = 127/185 (68.65%), Postives = 146/185 (78.92%), Query Frame = 2
Query:  146 TTISSSITPFLGFSVA-SAKSTSPLNTK-----RSFKVRCCQNLSL--VPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            T + S   P +  +VA SA+ ++  +TK     R  K    +  ++  VP +QRWMF   E  GPDIWN TWYPK+ADH  +DK WYVVDATD ILGR+ASTIAIHIRGKNLA+YTPSVDMGA+VIVVNA+KVAVSGKKRTQK+YRRHSGRPGG+KEETFDQLQ RIPERIIEHAVRGMLPKGRL
Sbjct:   29 TPVLSFPRPTVAAAVAVSARKSTSASTKCTEEWRQLKEAVKKEFAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRL 213          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ANAVT (50S ribosomal protein L13 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplM PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.524e-38
Identity = 77/103 (74.76%), Postives = 89/103 (86.41%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ WYVVDATDK LGRLAS IA+ +RGKN A YTP +D G +VIVVNAEKVAV+GKKRTQK+YRRHSGRPGGMK ETF +LQ R+PERI+EHAV+GMLPK  L
Sbjct:   13 ERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVVNAEKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_ANASP (50S ribosomal protein L13 OS=Anabaena sp. (strain PCC 7120) GN=rplM PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.435e-38
Identity = 76/103 (73.79%), Postives = 89/103 (86.41%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ WYVVDATDK LGRLAS IA+ +RGKN A YTP +D G +VIVVNA+KVAV+GKKRTQK+YRRHSGRPGGMK ETF +LQ R+PERI+EHAV+GMLPK  L
Sbjct:   13 ERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVVNAKKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_FREDI (50S ribosomal protein L13 OS=Fremyella diplosiphon GN=rplM PE=3 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.201e-37
Identity = 73/103 (70.87%), Postives = 88/103 (85.44%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ WY+VDATD+ LGRLAS IA+ +RGK  A YTP +D G +VIV+NAEK+AV+GKKRTQK+YRRHSGRPGGMK ETF +LQ RIPERI+EHAV+GMLPK  L
Sbjct:   13 EREWYIVDATDQRLGRLASEIAMVLRGKKKAEYTPHLDTGDFVIVINAEKIAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRIPERIVEHAVKGMLPKNSL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_CYAP4 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplM PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.404e-37
Identity = 78/117 (66.67%), Postives = 91/117 (77.78%), Query Frame = 2
Query:  326 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            N T+ P        +  WYVVDAT++ LGRLA+ IA+ +RGK    YTPS+D G +VIVVNAEKVAV+GKKRTQKIYRRHSGRPGGMK ETF +LQ R+PERIIEHAV+GMLPK  L
Sbjct:    2 NKTYLPSTTS---LEPKWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVVNAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPKNTL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_THEEB (50S ribosomal protein L13 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplM PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.427e-36
Identity = 74/100 (74.00%), Postives = 85/100 (85.00%), Query Frame = 2
Query:  377 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            WYV+DA D+ LGRLA+ IA  +RGKN A YTP +D G +VIV+NAEKV V+GKKR+QK+YRRHSGRPGGMK ETFDQLQ RIPERIIEHAV+GMLPK  L
Sbjct:   19 WYVIDAADQRLGRLAAEIARILRGKNKAIYTPHMDTGDFVIVINAEKVTVTGKKRSQKLYRRHSGRPGGMKIETFDQLQARIPERIIEHAVKGMLPKNSL 118          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_MICAN (50S ribosomal protein L13 OS=Microcystis aeruginosa (strain NIES-843) GN=rplM PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.208e-35
Identity = 71/103 (68.93%), Postives = 87/103 (84.47%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            ++ WYV+DA D+ LGRLA+ IA+ +RGKN AT+TP +D G +VIV+NAEKV V+GKKR QK+YRR SGRPGGMK E+FD+LQ RIPERIIEHAV+GMLPK  L
Sbjct:   13 EQKWYVIDAADQRLGRLATEIAMILRGKNKATFTPHLDTGDFVIVINAEKVTVTGKKRQQKVYRRDSGRPGGMKVESFDKLQKRIPERIIEHAVKGMLPKNSL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_CYAP8 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 8801) GN=rplM PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.691e-35
Identity = 69/103 (66.99%), Postives = 86/103 (83.50%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            D+ WYV+DA D+ LGRLAS +A  +RGKN  T+TP +D G +VI+VNAEKV V+GKK +QK+YRRHSGRPGGMK ETF++LQ R+PERI+EHAV+GMLPK  L
Sbjct:   13 DQKWYVIDAADQRLGRLASEVAQILRGKNKPTFTPHMDTGDFVIIVNAEKVVVTGKKSSQKLYRRHSGRPGGMKVETFEKLQARLPERIVEHAVKGMLPKNSL 115          
BLAST of FC923615 vs. ExPASy Swiss-Prot
Match: RL13_CYAA5 (50S ribosomal protein L13 OS=Cyanothece sp. (strain ATCC 51142) GN=rplM PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.691e-35
Identity = 70/103 (67.96%), Postives = 86/103 (83.50%), Query Frame = 2
Query:  368 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRL 676
            D+ WYV+DATD+ LGRLA  +A  +RGKN  TYTP +D G +VI++NA+KVAV+G+K TQK+YRRHSGRPGGMK ETF++LQ RIPERIIE AV+GMLPK  L
Sbjct:   13 DQKWYVIDATDQRLGRLACEVAKILRGKNKPTYTPHMDTGDFVIIINADKVAVTGRKSTQKLYRRHSGRPGGMKIETFEKLQQRIPERIIEKAVKGMLPKNAL 115          
The following BLAST results are available for this feature:
BLAST of FC923615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK13_ARATH3.364e-7063.1350S ribosomal protein L13, chloroplastic OS=Arabid... [more]
RK13_SPIOL2.112e-6468.6550S ribosomal protein L13, chloroplastic OS=Spinac... [more]
RL13_ANAVT1.524e-3874.7650S ribosomal protein L13 OS=Anabaena variabilis (... [more]
RL13_ANASP4.435e-3873.7950S ribosomal protein L13 OS=Anabaena sp. (strain ... [more]
RL13_FREDI2.201e-3770.8750S ribosomal protein L13 OS=Fremyella diplosiphon... [more]
RL13_CYAP46.404e-3766.6750S ribosomal protein L13 OS=Cyanothece sp. (strai... [more]
RL13_THEEB1.427e-3674.0050S ribosomal protein L13 OS=Thermosynechococcus e... [more]
RL13_MICAN1.208e-3568.9350S ribosomal protein L13 OS=Microcystis aeruginos... [more]
RL13_CYAP82.691e-3566.9950S ribosomal protein L13 OS=Cyanothece sp. (strai... [more]
RL13_CYAA52.691e-3567.9650S ribosomal protein L13 OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC31707B02EF StrClemenN Citrus clementina cDNA clone C31707B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923615 ID=FC923615; Name=FC923615; organism=Citrus clementina; type=EST; length=678bp
GGAAGAAGAGAAGAGTAAACAAGAGGAAGCTGTAAAGAAAGAAACCAAAA
AAATGGCAACCCTCTGTACGCCAACTTGTGTAATCTTCTCATCATTACAA
TCATCATCATCTTCTTCTTCTTCATTCAAGACACTCAACACAGGCACTAC
CATCAGTTCTAGCATAACCCCATTCCTCGGGTTCTCTGTTGCTTCAGCGA
AATCGACATCGCCTTTGAACACCAAGCGATCGTTTAAGGTTCGCTGCTGC
CAGAACCTCTCTCTTGTCCCCGACAACCAACGCTGGATGTTCGAGCAGTC
CGAAGTTAATGGACCAGACATTTGGAACAATACATGGTATCCAAAAGCTG
CTGATCACAGGCATTCAGATAAAACATGGTATGTGGTTGATGCAACCGAT
AAGATTCTTGGTAGACTTGCATCCACTATTGCCATTCATATTCGTGGAAA
GAATCTGGCGACCTACACTCCCAGTGTGGACATGGGAGCATATGTGATTG
TGGTGAATGCTGAAAAAGTTGCTGTATCTGGGAAGAAGAGGACACAAAAG
ATCTACAGGAGGCATTCAGGGAGACCTGGTGGTATGAAAGAGGAAACATT
TGACCAGCTACAGCATAGAATCCCAGAAAGAATTATTGAGCATGCTGTTC
GCGGAATGCTTCCGAAAGGGAGGCTTGG
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