FC923616

Overview
NameFC923616
Unique NameFC923616
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.417e-66
Identity = 125/190 (65.79%), Postives = 138/190 (72.63%), Query Frame = 2
Query:   92 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG---------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 634
            T+YVGNLPGD R REVEDLF KYGP+V IDLK+PPRPPGYAFVEF+D RDAEDAI GRDGY+FDG+RLRVELAHG         G                             LVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD  G TG+VDYT Y+DMKYA++KLD +EFRNAFS  YVRVREYDS
Sbjct:    8 TVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVREYDS 197          
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.307e-41
Identity = 90/179 (50.28%), Postives = 113/179 (63.13%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 622
            +YVGNLP D R ++VED+FYKYG I DIDLK     P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE    G                               +V+GLP S SWQDLKDHMR AGDVC++ VFRD    TG+V++   +DM YA+RKLD ++FR +    +Y+RV+
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 192          
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.708e-41
Identity = 89/179 (49.72%), Postives = 113/179 (63.13%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 622
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE    G                               +V+GLP S SWQDLKDHMR AGDVC++ VFRD    TG+V++   +DM YA+RKLD ++FR +    +Y+RV+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193          
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 4.968e-41
Identity = 88/179 (49.16%), Postives = 113/179 (63.13%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 622
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE    G                               +V+GLP S SWQDLKDHMR AGDVC++ V+RD    TG+V++   +DM YA+RKLD ++FR +    +Y+RV+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193          
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 4.968e-41
Identity = 88/179 (49.16%), Postives = 113/179 (63.13%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 622
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE    G                               +V+GLP S SWQDLKDHMR AGDVC++ V+RD    TG+V++   +DM YA+RKLD ++FR +    +Y+RV+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193          
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 4.968e-41
Identity = 88/179 (49.16%), Postives = 113/179 (63.13%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 622
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE    G                               +V+GLP S SWQDLKDHMR AGDVC++ V+RD    TG+V++   +DM YA+RKLD ++FR +    +Y+RV+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193          
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 4.968e-41
Identity = 88/179 (49.16%), Postives = 113/179 (63.13%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 622
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE    G                               +V+GLP S SWQDLKDHMR AGDVC++ V+RD    TG+V++   +DM YA+RKLD ++FR +    +Y+RV+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193          
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS1_BOVIN (Splicing factor, arginine/serine-rich 1 OS=Bos taurus GN=SFRS1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.968e-41
Identity = 88/179 (49.16%), Postives = 113/179 (63.13%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 622
            +YVGNLP D R +++ED+FYKYG I DIDLK     P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE    G                               +V+GLP S SWQDLKDHMR AGDVC++ V+RD    TG+V++   +DM YA+RKLD ++FR +    +Y+RV+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193          
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.446e-40
Identity = 91/193 (47.15%), Postives = 117/193 (60.62%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREYDS 634
            +YVGNLPGD R +EVED+F+KYG I  +D+K   R P +AFVEFED+RDAEDA+R RDGY FDG R+RVE   G                                          +V GLP + SWQDLKDHMR AGDVC++ V RD    TG+V++T Y+D+KYA+RKLD ++FR +    +Y+RVRE +S
Sbjct:   11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDG---TGVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRVREDNS 199          
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.888e-40
Identity = 90/189 (47.62%), Postives = 113/189 (59.79%), Query Frame = 2
Query:   95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH------------GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 622
            +YVGNLP D R ++VED+FYKYG I DIDLK     P +AFVEFED RDAEDA+  RDGY++DGYRLRVE               GG                             +V+GLP S SWQDLKDHMR AGDVC++ VFRD    TG+V++   +DM YA+RKLD ++FR +    +Y+RV+
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 202          
The following BLAST results are available for this feature:
BLAST of FC923616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
SFRS1_ARATH3.417e-6665.79Pre-mRNA-splicing factor SF2 OS=Arabidopsis thalia... [more]
SFR1B_DANRE1.307e-4150.28Splicing factor, arginine/serine-rich 1B OS=Danio ... [more]
SFRS1_CHICK1.708e-4149.72Splicing factor, arginine/serine-rich 1 OS=Gallus ... [more]
SFRS1_PONAB4.968e-4149.16Splicing factor, arginine/serine-rich 1 OS=Pongo a... [more]
SFRS1_PIG4.968e-4149.16Splicing factor, arginine/serine-rich 1 OS=Sus scr... [more]
SFRS1_MOUSE4.968e-4149.16Splicing factor, arginine/serine-rich 1 OS=Mus mus... [more]
SFRS1_HUMAN4.968e-4149.16Splicing factor, arginine/serine-rich 1 OS=Homo sa... [more]
SFRS1_BOVIN4.968e-4149.16Splicing factor, arginine/serine-rich 1 OS=Bos tau... [more]
RSP3_CAEEL1.446e-4047.15Probable splicing factor, arginine/serine-rich 3 O... [more]
SFR1A_DANRE1.888e-4047.62Splicing factor, arginine/serine-rich 1A OS=Danio ... [more]

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Properties
Property NameValue
Genbank descriptionC31707B03EF StrClemenN Citrus clementina cDNA clone C31707B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923616 ID=FC923616; Name=FC923616; organism=Citrus clementina; type=EST; length=634bp
GAATTCCGGAACTTACAATCGAGATTTCCACCTCTGAAATTCTAATTTCC
GATCAGAAAAAAAAACAAAAATGAGCAGCCGATCGAGCCGTACTCTTTAC
GTCGGAAACCTCCCGGGGGATACGAGAATGAGGGAAGTGGAAGACTTGTT
CTACAAGTATGGGCCTATTGTTGATATTGACTTGAAGATCCCACCAAGAC
CTCCGGGTTACGCCTTTGTTGAGTTTGAGGACTATCGGGACGCTGAGGAT
GCAATTCGCGGTCGAGATGGCTATAACTTTGATGGGTATCGATTGCGAGT
TGAACTAGCACATGGGGGTCGAAGACATTCGTCGTCGGTGGATCGTTATA
GCAGTTACAGCAGTGGAGGTAGCCGTGGAGTCTCCAGGCGCTCTGACTAT
CGTGTTTTGGTGACTGGATTACCTTCATCTGCTTCATGGCAAGACCTCAA
GGATCACATGCGTCGTGCTGGGGATGTCTGTTTTTCTCAAGTGTTTCGCG
ATCGTGGCGGTATGACGGGAATTGTGGATTACACTAGCTATGATGATATG
AAATATGCTATAAGGAAACTTGATCGCTCGGAGTTCCGGAATGCGTTTTC
CCGGTCCTATGTGCGGGTGAGGGAGTATGATTCA
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