FC923616
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1) HSP 1 Score: 251.136 bits (640), Expect = 3.417e-66 Identity = 125/190 (65.79%), Postives = 138/190 (72.63%), Query Frame = 2 Query: 92 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG---------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 634 T+YVGNLPGD R REVEDLF KYGP+V IDLK+PPRPPGYAFVEF+D RDAEDAI GRDGY+FDG+RLRVELAHG G LVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD G TG+VDYT Y+DMKYA++KLD +EFRNAFS YVRVREYDS Sbjct: 8 TVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVREYDS 197
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.307e-41 Identity = 90/179 (50.28%), Postives = 113/179 (63.13%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 622 +YVGNLP D R ++VED+FYKYG I DIDLK P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE G +V+GLP S SWQDLKDHMR AGDVC++ VFRD TG+V++ +DM YA+RKLD ++FR + +Y+RV+ Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 192
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3) HSP 1 Score: 169.088 bits (427), Expect = 1.708e-41 Identity = 89/179 (49.72%), Postives = 113/179 (63.13%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 622 +YVGNLP D R +++ED+FYKYG I DIDLK P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE G +V+GLP S SWQDLKDHMR AGDVC++ VFRD TG+V++ +DM YA+RKLD ++FR + +Y+RV+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3) HSP 1 Score: 167.548 bits (423), Expect = 4.968e-41 Identity = 88/179 (49.16%), Postives = 113/179 (63.13%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 622 +YVGNLP D R +++ED+FYKYG I DIDLK P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE G +V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR + +Y+RV+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3) HSP 1 Score: 167.548 bits (423), Expect = 4.968e-41 Identity = 88/179 (49.16%), Postives = 113/179 (63.13%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 622 +YVGNLP D R +++ED+FYKYG I DIDLK P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE G +V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR + +Y+RV+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3) HSP 1 Score: 167.548 bits (423), Expect = 4.968e-41 Identity = 88/179 (49.16%), Postives = 113/179 (63.13%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 622 +YVGNLP D R +++ED+FYKYG I DIDLK P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE G +V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR + +Y+RV+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2) HSP 1 Score: 167.548 bits (423), Expect = 4.968e-41 Identity = 88/179 (49.16%), Postives = 113/179 (63.13%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 622 +YVGNLP D R +++ED+FYKYG I DIDLK P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE G +V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR + +Y+RV+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFRS1_BOVIN (Splicing factor, arginine/serine-rich 1 OS=Bos taurus GN=SFRS1 PE=2 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 4.968e-41 Identity = 88/179 (49.16%), Postives = 113/179 (63.13%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 622 +YVGNLP D R +++ED+FYKYG I DIDLK P +AFVEFED RDAEDA+ GRDGY++DGYRLRVE G +V+GLP S SWQDLKDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR + +Y+RV+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2) HSP 1 Score: 166.007 bits (419), Expect = 1.446e-40 Identity = 91/193 (47.15%), Postives = 117/193 (60.62%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREYDS 634 +YVGNLPGD R +EVED+F+KYG I +D+K R P +AFVEFED+RDAEDA+R RDGY FDG R+RVE G +V GLP + SWQDLKDHMR AGDVC++ V RD TG+V++T Y+D+KYA+RKLD ++FR + +Y+RVRE +S Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDG---TGVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRVREDNS 199
BLAST of FC923616 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2) HSP 1 Score: 165.622 bits (418), Expect = 1.888e-40 Identity = 90/189 (47.62%), Postives = 113/189 (59.79%), Query Frame = 2 Query: 95 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH------------GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 622 +YVGNLP D R ++VED+FYKYG I DIDLK P +AFVEFED RDAEDA+ RDGY++DGYRLRVE GG +V+GLP S SWQDLKDHMR AGDVC++ VFRD TG+V++ +DM YA+RKLD ++FR + +Y+RV+ Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 202 The following BLAST results are available for this feature:
BLAST of FC923616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923616 ID=FC923616; Name=FC923616; organism=Citrus clementina; type=EST; length=634bpback to top |