FC923617

Overview
NameFC923617
Unique NameFC923617
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923617 vs. ExPASy Swiss-Prot
Match: SNAG_ARATH (Gamma-soluble NSF attachment protein OS=Arabidopsis thaliana GN=GSNAP PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.754e-80
Identity = 146/207 (70.53%), Postives = 169/207 (81.64%), Query Frame = 2
Query:   86 SSDPHKLMVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEEDDKEQMAFDVYRAATNVYIKLEKYADAATFLLRWGLAADKCHATNSQCKAYLSAIIVYLYANDFKQ 706
            SSDP K+M KADK+TKL+LTRWSADW+ AT+LYEQAANGFR +   E+AK+A EKAS+GQEM +SPWDAAKHMESAAALA++L  W EVADFYRKASELY ECGR+QP                P+DAIQLYTDAC +LEED ++QMAFD+YRA  NVYIKLEK+ DAATF LR G+AADKC ATNSQCKAYLSAII+YLYA+D +Q
Sbjct:    2 SSDPDKMMSKADKMTKLTLTRWSADWRGATELYEQAANGFRASNKYEKAKVALEKASKGQEMQASPWDAAKHMESAAALAQKLSIWNEVADFYRKASELYVECGRAQPASDALGKAARALEDVKPDDAIQLYTDACEILEEDGRDQMAFDLYRACANVYIKLEKFTDAATFFLRLGVAADKCDATNSQCKAYLSAIILYLYAHDLQQ 208          
BLAST of FC923617 vs. ExPASy Swiss-Prot
Match: SNAG_DICDI (Gamma-soluble NSF attachment protein OS=Dictyostelium discoideum GN=snpC PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 65/197 (32.99%), Postives = 99/197 (50.25%), Query Frame = 2
Query:  107 MVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEEDDKEQMAFDVYRAATNVYIKLEKYADAATFLLRWGLAADKCHATNSQCKAYLSAIIVYLYAND 697
            M + DKL+K ++ RW ADW SA   YE+AAN FR AK  + AK  F + S  Q  +   + AAK ME+A+A+AKEL   +E A+   ++ +LY   G S                      I+L TDAC + E DDK+  + D ++   ++ +K +KY +A   ++       K    +   K+ LS I + L  +D
Sbjct:   17 MKEGDKLSKTNIFRWKADWDSAALAYEKAANAFRSAKIYDSAKYCFLRLSLCQTHMDVYYLAAKSMENASAMAKELKETQECANLLLESCKLYRTNGNSFQAADTMTKAAKLLEDIDLNQTIKLLTDACELFELDDKDHFSGDTFKQTISMLLKHKKYTEAVDLMILQNRVFVKLEQNHDLHKSCLSVITISLATDD 213          
BLAST of FC923617 vs. ExPASy Swiss-Prot
Match: SNAG_BOVIN (Gamma-soluble NSF attachment protein OS=Bos taurus GN=NAPG PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 53/209 (25.36%), Postives = 94/209 (44.98%), Query Frame = 2
Query:   74 AAMASSDPHKLMVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEEDDKEQMAFDVYRAATNVYIKLEKYADAATFLLRWGLAADKCHATNSQCKAYLSAIIVYLYANDF 700
            AA   ++  + + KA+K  K    +W  D+ SA   Y +AA  F+ AK  EQAK A  K +   E   + + AAK  E A  + KE+    E      KAS +Y E G                    PE A+QLY     + E +++ + A ++   A+ + ++  ++ +AA  + +      +     +  K  ++ ++V+L+ ND+
Sbjct:    2 AAQKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLKEAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAAISIQKEKNIYKEIENYPTCYKKTIAQVLVHLHRNDY 210          
BLAST of FC923617 vs. ExPASy Swiss-Prot
Match: SNAG_MOUSE (Gamma-soluble NSF attachment protein OS=Mus musculus GN=Napg PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 52/209 (24.88%), Postives = 94/209 (44.98%), Query Frame = 2
Query:   74 AAMASSDPHKLMVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEEDDKEQMAFDVYRAATNVYIKLEKYADAATFLLRWGLAADKCHATNSQCKAYLSAIIVYLYANDF 700
            AA   ++  + + KA+K  K    +W  D+ SA   Y +AA  F+ AK  EQAK A  + +   E   + + AAK  E A  + KE+    E      KAS +Y E G                    PE A+QLY     + E +++ + A ++   A+ + ++  ++ +AA  + +      +     +  K  ++ ++V+L+ ND+
Sbjct:    2 AAQKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNIYKEIENYPTCYKKTIAQVLVHLHRNDY 210          
BLAST of FC923617 vs. ExPASy Swiss-Prot
Match: SNAG_HUMAN (Gamma-soluble NSF attachment protein OS=Homo sapiens GN=NAPG PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 52/209 (24.88%), Postives = 94/209 (44.98%), Query Frame = 2
Query:   74 AAMASSDPHKLMVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEEDDKEQMAFDVYRAATNVYIKLEKYADAATFLLRWGLAADKCHATNSQCKAYLSAIIVYLYANDF 700
            AA   ++  + + KA+K  K    +W  D+ SA   Y +AA  F+ AK  EQAK A  + +   E   + + AAK  E A  + KE+    E      KAS +Y E G                    PE A+QLY     + E +++ + A ++   A+ + ++  ++ +AA  + +      +     +  K  ++ ++V+L+ ND+
Sbjct:    2 AAQKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNIYKEIENYPTCYKKTIAQVLVHLHRNDY 210          
The following BLAST results are available for this feature:
BLAST of FC923617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SNAG_ARATH1.754e-8070.53Gamma-soluble NSF attachment protein OS=Arabidopsi... [more]
SNAG_DICDI9.780e-2332.99Gamma-soluble NSF attachment protein OS=Dictyostel... [more]
SNAG_BOVIN3.725e-1425.36Gamma-soluble NSF attachment protein OS=Bos taurus... [more]
SNAG_MOUSE8.298e-1424.88Gamma-soluble NSF attachment protein OS=Mus muscul... [more]
SNAG_HUMAN8.298e-1424.88Gamma-soluble NSF attachment protein OS=Homo sapie... [more]
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Properties
Property NameValue
Genbank descriptionC31707B04EF StrClemenN Citrus clementina cDNA clone C31707B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923617 ID=FC923617; Name=FC923617; organism=Citrus clementina; type=EST; length=707bp
AGAGTCAAGTGCCGTGTATGTGATTGAATTGCGCGGAAATCTGAGAAACA
GGTGGACTGTTGGTTCGGAGTGAGCTGCGATGGCGAGTTCCGATCCTCAC
AAGTTGATGGTCAAAGCCGACAAATTAACAAAACTCAGTCTTACCAGATG
GAGTGCTGATTGGAAAAGTGCTACTCAATTGTATGAACAGGCTGCTAATG
GTTTCAGGGTTGCCAAAAATATTGAGCAAGCAAAAATTGCATTTGAGAAA
GCTTCGCAAGGACAAGAGATGCTCTCCTCACCATGGGATGCGGCTAAGCA
TATGGAGTCTGCTGCTGCTTTAGCTAAGGAACTACATAATTGGAGGGAAG
TTGCTGACTTTTATAGAAAAGCATCAGAGTTGTACAATGAATGTGGGAGA
TCACAACCTGCCTCAGATGCTCTAGCAAAGGCTGCTCGTGCATTGGAAGA
TGCTGTGCCAGAGGATGCTATTCAACTCTATACTGATGCATGCATAATGC
TTGAAGAGGATGACAAGGAACAAATGGCCTTTGATGTATATCGTGCTGCC
ACTAATGTTTATATAAAGCTTGAGAAGTATGCTGATGCTGCCACTTTTCT
GTTGAGATGGGGTTTGGCAGCTGATAAGTGCCATGCTACCAACAGCCAGT
GCAAGGCATATCTTAGTGCAATTATTGTGTATCTTTATGCTAATGACTTC
AAGCAAG
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