FC923618
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1) HSP 1 Score: 329.331 bits (843), Expect = 1.236e-89 Identity = 161/187 (86.10%), Postives = 180/187 (96.26%), Query Frame = 2 Query: 68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 628 MGIDLIAGGKSKK+KRTAPKS+D+YLKLLVKLYRFLVRR++SNF+ VILKRLFMSKVNK P+SLSRL +FM GK+DKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR SRGF+V Sbjct: 1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRKSRGFKV 187
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2) HSP 1 Score: 329.331 bits (843), Expect = 1.236e-89 Identity = 161/187 (86.10%), Postives = 179/187 (95.72%), Query Frame = 2 Query: 68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 628 MGIDLIAGGKSKK+KRTAPKS+D+YLKL VKLYRFLVRRT+S F+ VILKRLFMSKVNK P+SLSRL +FM GKEDKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR SRGF+V Sbjct: 1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFKV 187
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1) HSP 1 Score: 316.62 bits (810), Expect = 8.292e-86 Identity = 158/184 (85.87%), Postives = 173/184 (94.02%), Query Frame = 2 Query: 77 DLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 628 DL AGGK+KK+KRT+PKSNDIYLKLLVKLYRFLVRRTDSNF+ VILKRLFMSKVN+PP+SLSRL K+M+GKE KI VVVG VTDDIRVY+VP +KVTAL+FTETARARI+KAGGECLTFDQLALR PL +TVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE+ARG+R SRGFRV Sbjct: 1 DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 183
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3) HSP 1 Score: 292.738 bits (748), Expect = 1.282e-78 Identity = 146/188 (77.66%), Postives = 165/188 (87.77%), Query Frame = 2 Query: 68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 628 MGIDLIAGGKSKK+KRT PKS+D+YLKLLVK R+LVRRT+S F+ VILKRLFMSKVNK P+SLSRL ++M GK+ KIAV+VGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECLTFDQLAL P +NTVLLRGPKN REAVKHFGPAPGVPHSHTKPYVR G+K E ARG+R SRGF+V Sbjct: 1 MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRRRSRGFKV 188
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_ICTPU (60S ribosomal protein L18 OS=Ictalurus punctatus GN=rpl18 PE=2 SV=3) HSP 1 Score: 251.136 bits (640), Expect = 4.278e-66 Identity = 125/188 (66.49%), Postives = 151/188 (80.32%), Query Frame = 2 Query: 68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625 MG+D I K +K RT PKS DIYL+LLVKLYRFL RR+D+ F+KV+LKRLFMSK N+PP++LSRL + MK G+E+KIAVVVGT+TDD+R+ +P LKV ALR T AR RI KAGG+ +TFDQLA+ P GQ TVLL GP+ ARE +HFG APG PHSHTKPY+RSKGRKFERARG+R SRG++ Sbjct: 1 MGVD-IRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPPLALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRSKGRKFERARGRRASRGYK 187
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_MOUSE (60S ribosomal protein L18 OS=Mus musculus GN=Rpl18 PE=2 SV=3) HSP 1 Score: 249.595 bits (636), Expect = 1.245e-65 Identity = 125/188 (66.49%), Postives = 152/188 (80.85%), Query Frame = 2 Query: 68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625 MG+D I K +K +R PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+PP+SLSR+ + MK G+E+K AVVVGTVTDD+R+ EVP LKV ALR + AR+RI KAGG+ LTFDQLAL +P G+ TVLL GP+ RE +HFG APG PHSHTKPYVRSKGRKFERARG+R SRG++ Sbjct: 1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 187
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.245e-65 Identity = 124/188 (65.96%), Postives = 158/188 (84.04%), Query Frame = 2 Query: 68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625 MGID I +K R PKS ++YL LLVK+YRFL RR+ + F++++LKRLFMS++NKP +SL+R+T+FMK G+E+ IAVVVGTVTDD+R+Y+VP L++ ALR TE ARARI KAGGE LTFDQLA++AP G+ TVL++GP+N+REA +HFGPAPGVPHSHTKPYVRSKGRKFERARG+R SR ++ Sbjct: 1 MGID-INHKYDRKVVRRRPKSENVYLGLLVKVYRFLARRSGAKFNRIVLKRLFMSRINKPVISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFERARGRRKSRRYK 187
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_RAT (60S ribosomal protein L18 OS=Rattus norvegicus GN=Rpl18 PE=2 SV=2) HSP 1 Score: 249.21 bits (635), Expect = 1.626e-65 Identity = 124/188 (65.96%), Postives = 152/188 (80.85%), Query Frame = 2 Query: 68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625 MG+D I K +K +R PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+PP+SLSR+ + MK G+E+K AVVVGT+TDD+R+ EVP LKV ALR + AR+RI KAGG+ LTFDQLAL +P G+ TVLL GP+ RE +HFG APG PHSHTKPYVRSKGRKFERARG+R SRG++ Sbjct: 1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 187
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1) HSP 1 Score: 248.825 bits (634), Expect = 2.123e-65 Identity = 125/188 (66.49%), Postives = 153/188 (81.38%), Query Frame = 2 Query: 68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625 MGID I +K +RT PKS D+YL+LLVKLYR+L RRT + F+K+ILKRLFMSK+ +PP+SLS++ +FMK G+E AV+VGTVTDD R++E+P L + ALR T+TARA I KAGGE +TFDQLALR+P G TVLL+G +NAREAVKHFGPAPGVPHSH KP VRSKGRKFERARG+R S G++ Sbjct: 1 MGID-INHKYDRKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFMKKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFERARGRRRSCGYK 187
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_MACFA (60S ribosomal protein L18 OS=Macaca fascicularis GN=RPL18 PE=2 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 4.730e-65 Identity = 125/188 (66.49%), Postives = 151/188 (80.32%), Query Frame = 2 Query: 68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625 MG+D I K +K +R PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+PP+SLSR+ + MK G+E+K AVVVGT+TDD+RV EVP LKV ALR T AR+RI +AGG+ LTFDQLAL +P G TVLL GP+ RE +HFG APG PHSHTKPYVRSKGRKFERARG+R SRG++ Sbjct: 1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 187 The following BLAST results are available for this feature:
BLAST of FC923618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 39
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923618 ID=FC923618; Name=FC923618; organism=Citrus clementina; type=EST; length=719bpback to top |