FC923618

Overview
NameFC923618
Unique NameFC923618
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923618_ssr254 microsatellite FC923618_ssr254:254..263. BLAST: Citrus ESTs to Prunus persica proteins V1
FC923618_ssr46 microsatellite FC923618_ssr46:46..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14508 contig Ccv1_Contig14508:1..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.236e-89
Identity = 161/187 (86.10%), Postives = 180/187 (96.26%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 628
            MGIDLIAGGKSKK+KRTAPKS+D+YLKLLVKLYRFLVRR++SNF+ VILKRLFMSKVNK P+SLSRL +FM GK+DKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR SRGF+V
Sbjct:    1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRKSRGFKV 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2)

HSP 1 Score: 329.331 bits (843), Expect = 1.236e-89
Identity = 161/187 (86.10%), Postives = 179/187 (95.72%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 628
            MGIDLIAGGKSKK+KRTAPKS+D+YLKL VKLYRFLVRRT+S F+ VILKRLFMSKVNK P+SLSRL +FM GKEDKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR SRGF+V
Sbjct:    1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFKV 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 8.292e-86
Identity = 158/184 (85.87%), Postives = 173/184 (94.02%), Query Frame = 2
Query:   77 DLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 628
            DL AGGK+KK+KRT+PKSNDIYLKLLVKLYRFLVRRTDSNF+ VILKRLFMSKVN+PP+SLSRL K+M+GKE KI VVVG VTDDIRVY+VP +KVTAL+FTETARARI+KAGGECLTFDQLALR PL  +TVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE+ARG+R SRGFRV
Sbjct:    1 DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 183          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3)

HSP 1 Score: 292.738 bits (748), Expect = 1.282e-78
Identity = 146/188 (77.66%), Postives = 165/188 (87.77%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 628
            MGIDLIAGGKSKK+KRT PKS+D+YLKLLVK  R+LVRRT+S F+ VILKRLFMSKVNK P+SLSRL ++M GK+ KIAV+VGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECLTFDQLAL  P   +NTVLLRGPKN REAVKHFGPAPGVPHSHTKPYVR  G+K E ARG+R SRGF+V
Sbjct:    1 MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRRRSRGFKV 188          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_ICTPU (60S ribosomal protein L18 OS=Ictalurus punctatus GN=rpl18 PE=2 SV=3)

HSP 1 Score: 251.136 bits (640), Expect = 4.278e-66
Identity = 125/188 (66.49%), Postives = 151/188 (80.32%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MG+D I   K +K  RT PKS DIYL+LLVKLYRFL RR+D+ F+KV+LKRLFMSK N+PP++LSRL + MK  G+E+KIAVVVGT+TDD+R+  +P LKV ALR T  AR RI KAGG+ +TFDQLA+  P GQ TVLL GP+ ARE  +HFG APG PHSHTKPY+RSKGRKFERARG+R SRG++
Sbjct:    1 MGVD-IRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPPLALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRSKGRKFERARGRRASRGYK 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_MOUSE (60S ribosomal protein L18 OS=Mus musculus GN=Rpl18 PE=2 SV=3)

HSP 1 Score: 249.595 bits (636), Expect = 1.245e-65
Identity = 125/188 (66.49%), Postives = 152/188 (80.85%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MG+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+PP+SLSR+ + MK  G+E+K AVVVGTVTDD+R+ EVP LKV ALR +  AR+RI KAGG+ LTFDQLAL +P G+ TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFERARG+R SRG++
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.245e-65
Identity = 124/188 (65.96%), Postives = 158/188 (84.04%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MGID I     +K  R  PKS ++YL LLVK+YRFL RR+ + F++++LKRLFMS++NKP +SL+R+T+FMK  G+E+ IAVVVGTVTDD+R+Y+VP L++ ALR TE ARARI KAGGE LTFDQLA++AP G+ TVL++GP+N+REA +HFGPAPGVPHSHTKPYVRSKGRKFERARG+R SR ++
Sbjct:    1 MGID-INHKYDRKVVRRRPKSENVYLGLLVKVYRFLARRSGAKFNRIVLKRLFMSRINKPVISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFERARGRRKSRRYK 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_RAT (60S ribosomal protein L18 OS=Rattus norvegicus GN=Rpl18 PE=2 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.626e-65
Identity = 124/188 (65.96%), Postives = 152/188 (80.85%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MG+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+PP+SLSR+ + MK  G+E+K AVVVGT+TDD+R+ EVP LKV ALR +  AR+RI KAGG+ LTFDQLAL +P G+ TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFERARG+R SRG++
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.123e-65
Identity = 125/188 (66.49%), Postives = 153/188 (81.38%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MGID I     +K +RT PKS D+YL+LLVKLYR+L RRT + F+K+ILKRLFMSK+ +PP+SLS++ +FMK  G+E   AV+VGTVTDD R++E+P L + ALR T+TARA I KAGGE +TFDQLALR+P G  TVLL+G +NAREAVKHFGPAPGVPHSH KP VRSKGRKFERARG+R S G++
Sbjct:    1 MGID-INHKYDRKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFMKKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFERARGRRRSCGYK 187          
BLAST of FC923618 vs. ExPASy Swiss-Prot
Match: RL18_MACFA (60S ribosomal protein L18 OS=Macaca fascicularis GN=RPL18 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.730e-65
Identity = 125/188 (66.49%), Postives = 151/188 (80.32%), Query Frame = 2
Query:   68 MGIDLIAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTDSNFDKVILKRLFMSKVNKPPMSLSRLTKFMK--GKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 625
            MG+D I   K +K +R  PKS DIYL+LLVKLYRFL RRT+S F++V+LKRLFMS+ N+PP+SLSR+ + MK  G+E+K AVVVGT+TDD+RV EVP LKV ALR T  AR+RI +AGG+ LTFDQLAL +P G  TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFERARG+R SRG++
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 187          
The following BLAST results are available for this feature:
BLAST of FC923618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL183_ARATH1.236e-8986.1060S ribosomal protein L18-3 OS=Arabidopsis thalian... [more]
RL182_ARATH1.236e-8986.1060S ribosomal protein L18-2 OS=Arabidopsis thalian... [more]
RL18_CICAR8.292e-8685.8760S ribosomal protein L18 (Fragment) OS=Cicer arie... [more]
RL181_ARATH1.282e-7877.66Putative 60S ribosomal protein L18-1 OS=Arabidopsi... [more]
RL18_ICTPU4.278e-6666.4960S ribosomal protein L18 OS=Ictalurus punctatus G... [more]
RL18_MOUSE1.245e-6566.4960S ribosomal protein L18 OS=Mus musculus GN=Rpl18... [more]
RL18_IXOSC1.245e-6565.9660S ribosomal protein L18 OS=Ixodes scapularis GN=... [more]
RL18_RAT1.626e-6565.9660S ribosomal protein L18 OS=Rattus norvegicus GN=... [more]
RL18_TIMBA2.123e-6566.4960S ribosomal protein L18 OS=Timarcha balearica GN... [more]
RL18_MACFA4.730e-6566.4960S ribosomal protein L18 OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionC31707B05EF StrClemenN Citrus clementina cDNA clone C31707B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923618 ID=FC923618; Name=FC923618; organism=Citrus clementina; type=EST; length=719bp
GCTCCTTTTGAATAGCATTTGCTGTTTAGGGAAGCAGTCGCAGGGAGCAG
CAGCAGCAACAACAACAATGGGTATCGATTTGATAGCCGGTGGTAAGAGC
AAGAAGTCCAAGAGGACTGCCCCGAAATCGAACGATATCTATCTCAAGCT
TCTCGTCAAGCTGTACCGATTTCTCGTGAGGAGGACTGATAGCAATTTCG
ATAAGGTGATATTGAAGAGGCTCTTCATGAGCAAAGTCAACAAGCCTCCT
ATGTCTCTCTCTCGTTTGACTAAATTCATGAAGGGCAAGGAGGACAAGAT
TGCTGTGGTTGTTGGAACAGTCACTGATGATATTCGTGTGTATGAAGTTC
CTGCACTCAAGGTTACTGCACTGAGGTTCACAGAGACAGCAAGGGCAAGA
ATTGAGAAGGCAGGGGGAGAATGCTTGACATTTGACCAACTGGCTCTTCG
TGCTCCTTTGGGTCAGAACACGGTTCTCCTGAGAGGTCCGAAGAATGCTC
GTGAGGCTGTCAAGCACTTTGGACCTGCTCCTGGTGTACCACACAGCCAC
ACCAAACCCTATGTGCGATCTAAGGGAAGAAAATTTGAGAGGGCTAGAGG
AAAAAGGAACAGCAGAGGCTTCAGGGTTTGAGATGCAGAACTCATTCATA
AGGATACAGAGCAGCCGACCACCTTATGCAAATGTTGTGTTTTCTTTTTT
TCTCCTTGCTATTTTAATC
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