FC923622

Overview
NameFC923622
Unique NameFC923622
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923622_ssr114 microsatellite FC923622_ssr114:114..125. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9438 contig Ccv1_Contig9438:3..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP6_ORYSJ (Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 7.198e-58
Identity = 113/176 (64.20%), Postives = 131/176 (74.43%), Query Frame = 2
Query:  173 SIIHDMMWRRSHRVVGDAADHDMAGGSSPTC----CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            SI    +  RSHR  G A      G +        CWA LP ELLRE+L +IE ++  WPSRR VVACAGVCRSWR ITKEIV+VPE SG LTFPIS+KQPGPRD  L+CFI+RNR+TQTY+LY+ LT ALADDGKFLLAARKCR+ TCTDY+ISL   D  KGS+TY+G+LRS F
Sbjct:   16 SISRHSLRSRSHRGGGGAPRVAAVGPAEAAAMQQSCWAQLPPELLREVLVRIEESEVWWPSRRDVVACAGVCRSWRGITKEIVRVPEASGKLTFPISLKQPGPRDGTLKCFIRRNRTTQTYYLYIGLTEALADDGKFLLAARKCRKPTCTDYLISLDMSDMSKGSNTYIGKLRSNF 191          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP9_ARATH (Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.158e-56
Identity = 113/177 (63.84%), Postives = 132/177 (74.58%), Query Frame = 2
Query:  161 MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSA-WPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            MT +S++ +M   R HRVV  AA       SS    W+ LP+ELLREIL ++E  D   WPSRR+VVACAGVCRSWR +TKEIV VPE S  LTFPIS+KQ GPRD L+QCFIKRNR+TQ+YHLYL LT +L D+GKFLLAA K +RATCTDYIISL SDD  K S+ YLG +RS F
Sbjct:    1 MTFRSLLQEMR-SRPHRVVHAAAS---TANSSDPFSWSELPEELLREILIRVETVDGGDWPSRRNVVACAGVCRSWRILTKEIVAVPEFSSKLTFPISLKQSGPRDSLVQCFIKRNRNTQSYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIISLRSDDISKRSNAYLGRMRSNF 173          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP11_ARATH (Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.560e-55
Identity = 113/180 (62.78%), Postives = 133/180 (73.89%), Query Frame = 2
Query:  161 MTIKSIIHDMMWRRSHRVVGD---AADHDMAGGSSPTCCWANLPQELLREILAKIEAADSA-WPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            MT++S+I +M   R HRVV D   AA  D    SS    W+ +P+ELLREIL ++EAAD   WPSRRSVVACAGVCR WR +  E V VPE+S  LTFPIS+KQPGPRD L+QCFIKRNR TQ+YHLYL LTN+L DDGKFLLAA K +  TCTDYIISL SDD  + S  Y+G++RS F
Sbjct:    1 MTLRSLILEMR-SRPHRVVHDLAAAAAADSTSVSSQDYRWSEIPEELLREILIRVEAADGGGWPSRRSVVACAGVCRGWRLLMNETVVVPEISSKLTFPISLKQPGPRDSLVQCFIKRNRITQSYHLYLGLTNSLTDDGKFLLAACKLKHTTCTDYIISLRSDDMSRRSQAYVGKVRSNF 179          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP11_ORYSJ (Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.460e-52
Identity = 94/141 (66.67%), Postives = 115/141 (81.56%), Query Frame = 2
Query:  266 CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            CW  LP ELLRE+LA++E ++  WP RR VVACAGVCRSWR I +EIV+ PE SG LTFPIS+KQPGPRD  ++CFI RNR+TQTY+LY+ LT+AL DDGKFLLAARKCRR TCT+Y+ISL  +D  K + +Y+G+LRS F
Sbjct:   54 CWTQLPPELLREVLARVEESEGWWPRRRDVVACAGVCRSWRGIVREIVRTPEASGNLTFPISLKQPGPRDAPMKCFIVRNRTTQTYYLYIGLTDALTDDGKFLLAARKCRRTTCTEYLISLDMNDISKRTDSYVGKLRSNF 194          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP3_ARATH (Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.708e-52
Identity = 102/164 (62.20%), Postives = 127/164 (77.44%), Query Frame = 2
Query:  200 RSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALA-DDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            RS RVV D +    A   S   CWA++P ELLR++L +IE ++  WPSR++VV+CAGVCR+WR I KEIV+VPELS  LTFPIS+KQPGPR  L+QC+I RNRS QTY+LYL L  A + DDGKFLLAA++ RR TCTDYIISL+ DD  +GS+TY+G+LRS F
Sbjct:   32 RSQRVVQDTSVPVDAFKQS---CWASMPPELLRDVLMRIEQSEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQPGPRGSLVQCYIMRNRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYIISLNCDDVSRGSNTYIGKLRSNF 192          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP14_ORYSJ (Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.172e-46
Identity = 87/165 (52.73%), Postives = 126/165 (76.36%), Query Frame = 2
Query:  200 RSHRVVGDAADHDMAGGSSP---TCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRS 682
            RSH  V +  D   A  ++    + CWANLP ELLR+++ ++EA+++AWPSR++VVACA VCR+WR + +EIVK PE  G +TFP+S+KQPGPR+  +QCFIKR++STQTY+LYL L++A L + GKFLL+A++  RATCT+Y I + +D+  + S+ Y+G+LRS
Sbjct:   33 RSHSAVHELRDGHAAAAAADVVQSSCWANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPVSLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMSADNTSRSSNMYIGKLRS 197          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP8_ORYSJ (Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.837e-46
Identity = 88/164 (53.66%), Postives = 123/164 (75.00%), Query Frame = 2
Query:  200 RSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            +S   V +  D D+    S    WA+LP ELLR+++ ++EA++S WPSR+ VV+CA VC++WR + KEIV  PE  G LTFP+S+KQPGPRD ++QCFIKR++S  TYHLYL L+ A LAD GKFLL+A++ R+ TCT+Y+IS+ +D+  + SSTY+G+LRS F
Sbjct:   39 KSQSTVHELCDADLIIQESR---WASLPPELLRDVIRRLEASESTWPSRKDVVSCAAVCKAWREMCKEIVLSPEFCGKLTFPLSLKQPGPRDGMIQCFIKRDKSKSTYHLYLCLSTAVLADSGKFLLSAKRHRKTTCTEYVISMDADNISRSSSTYIGKLRSNF 199          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP1_ARATH (Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.837e-46
Identity = 84/141 (59.57%), Postives = 115/141 (81.56%), Query Frame = 2
Query:  269 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            WANLP ELLR+++ ++E ++S WP+RR VVACA VCRSWR + KEIV+ PELSG +TFP+S+KQPGPRD  +QCFIKR++S  TYHLYL L+ A L ++GKFLL+A++ RR T T+Y+IS+H+D   + S+TY+G++RS F
Sbjct:   57 WANLPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPVSLKQPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVISMHADTISRSSNTYIGKIRSNF 197          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP5_ARATH (Tubby-like F-box protein 5 OS=Arabidopsis thaliana GN=TULP5 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.078e-45
Identity = 82/141 (58.16%), Postives = 116/141 (82.27%), Query Frame = 2
Query:  269 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            WANLP  LLR+++ K++ ++S WP+R+ VVACAGVC++WR + K+IVK PE SG LTFP+S+KQPGPRD ++QC+IKR++S  TYHLYLSL+ A L + GKFLL+A++ RRAT T+Y+IS+ +D+  + SSTY+G+L+S F
Sbjct:   55 WANLPAALLRDVMKKLDESESTWPARKQVVACAGVCKTWRLMCKDIVKSPEFSGKLTFPVSLKQPGPRDGIIQCYIKRDKSNMTYHLYLSLSPAILVESGKFLLSAKRSRRATYTEYVISMDADNISRSSSTYIGKLKSNF 195          
BLAST of FC923622 vs. ExPASy Swiss-Prot
Match: TLP13_ORYSJ (Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.408e-45
Identity = 83/142 (58.45%), Postives = 119/142 (83.80%), Query Frame = 2
Query:  266 CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRRITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA-LADDGKFLLAARKCRRATCTDYIISLHSDDXVKGSSTYLGELRSIF 688
            CWA+LP ELLR+I+ ++E +++ WPSR+ VVACAGVCR+WR + KEIVK PEL G +TFPIS++QPGPRD  +QCFI+R++STQTY+LYLSL +A L D+GKFLL+A++   ATCT+Y+IS+++++  + ++T +G+LRS F
Sbjct:   52 CWASLPPELLRDIIERLEESEATWPSRKHVVACAGVCRTWREMCKEIVKNPELCGKITFPISLRQPGPRDGTMQCFIRRDKSTQTYYLYLSLGSAVLVDNGKFLLSAKRNWHATCTEYVISMNANNLSRSTNTNIGKLRSNF 193          
The following BLAST results are available for this feature:
BLAST of FC923622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
TLP6_ORYSJ7.198e-5864.20Tubby-like F-box protein 6 OS=Oryza sativa subsp. ... [more]
TLP9_ARATH5.158e-5663.84Tubby-like F-box protein 9 OS=Arabidopsis thaliana... [more]
TLP11_ARATH2.560e-5562.78Tubby-like F-box protein 11 OS=Arabidopsis thalian... [more]
TLP11_ORYSJ3.460e-5266.67Tubby-like F-box protein 11 OS=Oryza sativa subsp.... [more]
TLP3_ARATH7.708e-5262.20Tubby-like F-box protein 3 OS=Arabidopsis thaliana... [more]
TLP14_ORYSJ2.172e-4652.73Tubby-like F-box protein 14 OS=Oryza sativa subsp.... [more]
TLP8_ORYSJ2.837e-4653.66Tubby-like F-box protein 8 OS=Oryza sativa subsp. ... [more]
TLP1_ARATH2.837e-4659.57Tubby-like F-box protein 1 OS=Arabidopsis thaliana... [more]
TLP5_ARATH1.078e-4558.16Tubby-like F-box protein 5 OS=Arabidopsis thaliana... [more]
TLP13_ORYSJ1.408e-4558.45Tubby-like F-box protein 13 OS=Oryza sativa subsp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31707B09EF StrClemenN Citrus clementina cDNA clone C31707B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923622 ID=FC923622; Name=FC923622; organism=Citrus clementina; type=EST; length=714bp
GAAAAGCACAAGCACTGCTGCTCTCGACCCTAATCTCTATCTGAATTCTC
ATCATCTCTCAAGTATTCTTCAGTCACCCATCAACCTCACCAACAAATCA
TAAAGCCTTCTCAAAATAAATAAATATTGAAATTAGAATTAAATCTCGAC
GGCTTCGTGTATGACAATAAAAAGCATAATTCATGACATGATGTGGCGGA
GGTCGCACCGCGTGGTCGGCGACGCGGCGGACCACGACATGGCCGGCGGC
TCTTCTCCTACGTGCTGCTGGGCGAACCTGCCGCAGGAGCTGCTGAGAGA
GATTCTGGCCAAAATCGAGGCGGCGGATAGCGCGTGGCCGTCACGGAGAA
GCGTTGTCGCGTGCGCTGGAGTTTGTCGGAGCTGGAGACGGATCACTAAA
GAGATTGTCAAAGTTCCTGAACTTTCCGGTTACTTGACTTTCCCCATCTC
CGTCAAACAGCCTGGTCCAAGGGATTATCTCCTCCAGTGCTTTATAAAGC
GAAATCGGTCCACCCAAACATATCACCTTTACCTCAGTTTAACTAATGCA
CTAGCAGACGATGGAAAGTTCCTTCTTGCTGCCCGCAAGTGTAGACGTGC
CACCTGTACAGATTATATTATCTCTTTACATTCTGATGATATNGTCAAAG
GGAGCAGCACTTATCTTGGGGAACTGAGATCAATTTTTTAGGAACCAGNT
CATAGTCTATGATG
back to top