FC923627

Overview
NameFC923627
Unique NameFC923627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15394 contig Ccv1_Contig15394:6..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS31_ARATH (40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=2 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 5.713e-98
Identity = 182/208 (87.50%), Postives = 188/208 (90.38%), Query Frame = 1 
Query:  103 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLV 726
            MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPM           QNVLGEKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+MESGAKGCEVIVSGKLRA RAKSMKFKDGYMVSSGQP  EYID+AVRHVLLRQGVLGIKVKIML WDP GK  P TPLPD+V
Sbjct:    1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVV 208
[Close]
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS33_ARATH (40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 7.462e-98
Identity = 181/208 (87.02%), Postives = 189/208 (90.87%), Query Frame = 1 
Query:  103 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLV 726
            MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPM           QNVLGEKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+MESGAKGCEVIVSGKLRA RAKSMKFKDGYMVSSGQP  EYID+AVRHVLLRQGVLG+KVKIML WDP GKQ P TPLPD+V
Sbjct:    1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVV 208
[Close]
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS32_ARATH (40S ribosomal protein S3-2 OS=Arabidopsis thaliana GN=RPS3B PE=1 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 8.250e-97
Identity = 180/208 (86.54%), Postives = 186/208 (89.42%), Query Frame = 1 
Query:  103 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLV 726
            M TQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPM           QNVLGEKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+MESGAKGCEVIVSGKLRA RAKSMKFKDGYMVSSGQP  EYIDSAVRHVLLRQGVLGIKVK+ML WDP G   P TPLPD+V
Sbjct:    1 MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVV 208
[Close]
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_RAT (40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.276e-89
Identity = 170/209 (81.34%), Postives = 178/209 (85.17%), Query Frame = 1 
Query:  103 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLVT 729
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP            QNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WDP+GK  P  PLPD V+
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVS 209
[Close]
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_MOUSE (40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.276e-89
Identity = 170/209 (81.34%), Postives = 178/209 (85.17%), Query Frame = 1 
Query:  103 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLVT 729
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP            QNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WDP+GK  P  PLPD V+
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVS 209
[Close]
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS31_XENLA (40S ribosomal protein S3-A OS=Xenopus laevis GN=rps3-A PE=2 SV=2)

HSP 1 Score: 329.331 bits (843), Expect = 1.276e-89
Identity = 170/209 (81.34%), Postives = 178/209 (85.17%), Query Frame = 1 
Query:  103 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLVT 729
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP            QNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WDP+GK  P  PLPD V+
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVS 209
[Close]
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_PIG (40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.666e-89
Identity = 170/209 (81.34%), Postives = 177/209 (84.69%), Query Frame = 1 
Query:  103 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLVT 729
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP            QNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WDP GK  P  PLPD V+
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVS 209
[Close]
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_HUMAN (40S ribosomal protein S3 OS=Homo sapiens GN=RPS3 PE=1 SV=2)

HSP 1 Score: 328.946 bits (842), Expect = 1.666e-89
Identity = 170/209 (81.34%), Postives = 177/209 (84.69%), Query Frame = 1 
Query:  103 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLVT 729
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP            QNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WDP GK  P  PLPD V+
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVS 209
[Close]
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_BOVIN (40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.666e-89
Identity = 170/209 (81.34%), Postives = 177/209 (84.69%), Query Frame = 1 
Query:  103 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLVT 729
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP            QNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WDP GK  P  PLPD V+
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVS 209
[Close]
BLAST of FC923627 vs. ExPASy Swiss-Prot
Match: RS3_AMBME (40S ribosomal protein S3 OS=Ambystoma mexicanum GN=RPS3 PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.666e-89
Identity = 169/209 (80.86%), Postives = 179/209 (85.65%), Query Frame = 1 
Query:  103 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMXXXXXXXXXXXQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQXPTTPLPDLVT 729
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP            QNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG+KGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKVKIML+WDP+GK  P  PLPD V+
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLAWDPSGKIGPKKPLPDHVS 209
The following BLAST results are available for this feature:
BLAST of FC923627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS31_ARATH5.713e-9887.5040S ribosomal protein S3-1 OS=Arabidopsis thaliana... [more]
RS33_ARATH7.462e-9887.0240S ribosomal protein S3-3 OS=Arabidopsis thaliana... [more]
RS32_ARATH8.250e-9786.5440S ribosomal protein S3-2 OS=Arabidopsis thaliana... [more]
RS3_RAT1.276e-8981.3440S ribosomal protein S3 OS=Rattus norvegicus GN=R... [more]
RS3_MOUSE1.276e-8981.3440S ribosomal protein S3 OS=Mus musculus GN=Rps3 P... [more]
RS31_XENLA1.276e-8981.3440S ribosomal protein S3-A OS=Xenopus laevis GN=rp... [more]
RS3_PIG1.666e-8981.3440S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=... [more]
RS3_HUMAN1.666e-8981.3440S ribosomal protein S3 OS=Homo sapiens GN=RPS3 P... [more]
RS3_BOVIN1.666e-8981.3440S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=... [more]
RS3_AMBME1.666e-8980.8640S ribosomal protein S3 OS=Ambystoma mexicanum GN... [more]

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Properties
Property NameValue
Genbank descriptionC31707C03EF StrClemenN Citrus clementina cDNA clone C31707C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923627 ID=FC923627; Name=FC923627; organism=Citrus clementina; type=EST; length=729bp
AGAAACTAAACCTAGGGTTTGCAGAGAGCTAGCTGCGCACACAAGCCACC
TCATTGAGATCATCAGATCCCTAACTGTGTAATCGAACCAACAGAAAGCA
AAATGGCAACTCAAATCAGCAAGAAAAGAAAGTTCGTGGCTGATGGCGTG
TTTTTCGCGGAGCTTAACGAGGTACTGACTAGAGAGCTTGCGGAGGACGG
TTATTCTGGAGTAGAGGTCAGGGTAACTCCCATGCGTACTGAGATCATCA
TCCGAACCACTCGCACTCAGAACGTTCTTGGTGAGAAAGGGAGGAGAATT
AGAGAGCTGACATCAGTGGTGCAGAAAAGGTTCAAATTCCCGGAGAATAG
CGTGGAGCTGTACGCTGAGAAAGTCAACAATAGAGGACTATGTGCCATTG
CTCAAGCCGAGTCTCTTCGCTACAAGCTCCTTGGTGGGCTTGCTGTTCGC
AGGGCTTGCTATGGTGTCTTGAGGTTCATTATGGAAAGTGGAGCCAAGGG
ATGTGAGGTCATTGTCAGTGGAAAGTTGAGGGCACAACGTGCAAAATCAA
TGAAGTTTAAGGATGGATATATGGTCTCTTCTGGTCAGCCAGTGAATGAA
TATATTGACTCTGCTGTGAGACATGTTCTTTTGAGACAGGGTGTACTTGG
TATTAAGGTCAAGATCATGCTTAGTTGGGATCCTAATGGAAAGCAGGNTC
CTACTACCCCTCTACCTGATCTCGTAACA
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