FC923631

Overview
NameFC923631
Unique NameFC923631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9436 contig Ccv1_Contig9436:200..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923631 vs. ExPASy Swiss-Prot
Match: MPU1_ARATH (Mannose-P-dolichol utilization defect 1 protein homolog OS=Arabidopsis thaliana GN=At5g59470 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 6.104e-73
Identity = 129/204 (63.24%), Postives = 163/204 (79.90%), Query Frame = 3
Query:   12 GSLRDGKFPEKDCLLPLLSKVLGYLIVALSTTVKLPQILKILKHRSASGISATTFELEVVAATIGLGYSIQKGIPFSAYGEVFFILIQGLILVAITYYYSQPVGTATWIRALLYCAIAPTILAGQINPVLFETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAP-QCCYGLYMGALMNGIV 620
            GSLR+G+FP KDCLLPL+SK+LGY +VA S TVKLPQI+KI+ ++S  G+S   FELEV+  TI L Y + K +PFSA+GE+ F+LIQ LILVA  YY+SQP+   TW++A+LY AIAPT+ AG+I+P LFE +YA +H+ FLSAR+PQIWKNF+NKSTGQLSFLTCLM+FGGA+ RVFTSIQEKAP     G+ +    NGI+
Sbjct:   13 GSLRNGEFPAKDCLLPLISKLLGYFLVAASMTVKLPQIMKIVDNKSVKGLSVVAFELEVIGYTISLAYCLNKDLPFSAFGELAFLLIQALILVACIYYFSQPLSVTTWVKAILYFAIAPTVFAGKIDPFLFEALYASKHLIFLSARIPQIWKNFRNKSTGQLSFLTCLMNFGGALARVFTSIQEKAPLSMLLGIVLSIFTNGII 216          
BLAST of FC923631 vs. ExPASy Swiss-Prot
Match: MPU1_HUMAN (Mannose-P-dolichol utilization defect 1 protein OS=Homo sapiens GN=MPDU1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.240e-24
Identity = 69/193 (35.75%), Postives = 105/193 (54.40%), Query Frame = 3
Query:   48 CLLPLLSKVLGYLIVALSTTVKLPQILKILKHRSASGISATTFELEVVAATIGLGYSIQKGIPFSAYGEVFFILIQGLILVAITYYYSQPVGTATWIRALLYCAIAPTILAGQINPVLFETIYACQHI-TFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPQCCYGLY-MGALMNGIV 620
            CL  LLSK LG  IVA S  VKLPQ+ KIL  +SA G+S  +  LE+VA T  + YSI    PFS++GE  F+++Q + +  +  +Y     T   +  L    +   +L   + P+   T+    ++   +  R+ Q   N+ N  TGQLS +T  + FGG++ R+FTSIQE       G + + +L NG++
Sbjct:   37 CLKILLSKGLGLGIVAGSLLVKLPQVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLVMHYRGQ--TVKGVAFLACYGLVLLVLLSPLTPLTVVTLLQASNVPAVVVGRLLQAATNYHNGHTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLI 227          
BLAST of FC923631 vs. ExPASy Swiss-Prot
Match: MPU1_MOUSE (Mannose-P-dolichol utilization defect 1 protein OS=Mus musculus GN=Mpdu1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.525e-23
Identity = 68/193 (35.23%), Postives = 106/193 (54.92%), Query Frame = 3
Query:   48 CLLPLLSKVLGYLIVALSTTVKLPQILKILKHRSASGISATTFELEVVAATIGLGYSIQKGIPFSAYGEVFFILIQGLILVAITYYYSQPVGTATWIRALLYCAIAPTILAGQINPVLFETIYACQHI-TFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPQCCYGLY-MGALMNGIV 620
            CL  LLSK LG  IVA S  VKLPQ+ K+L  +SA G+S  +  LE+VA T  + YSI    PFS++GE  F+ +Q + +  +  +Y     T   +  L   A+    L   + P+   T+    ++   +  ++ Q   N++N  TGQLS +T  M FGG++ R+FTS+QE       G++ + +L NG++
Sbjct:   37 CLKILLSKGLGLGIVAGSLLVKLPQVFKLLGAKSAEGLSLQSVMLELVALTGTVVYSITNNFPFSSWGEALFLTLQTVAICFLVMHYRGE--TVKGVAFLACYAMVLLALLSPLTPLAVVTLLQASNVPAVVVGKLLQAATNYRNGHTGQLSAITVFMLFGGSLARIFTSVQETGDPLMAGVFVVSSLCNGLI 227          
BLAST of FC923631 vs. ExPASy Swiss-Prot
Match: MPU1_CRIGR (Mannose-P-dolichol utilization defect 1 protein OS=Cricetulus griseus GN=MPDU1 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.525e-23
Identity = 73/194 (37.63%), Postives = 106/194 (54.64%), Query Frame = 3
Query:   48 CLLPLLSKVLGYLIVALSTTVKLPQILKILKHRSASGISATTFELEVVAATIGLGYSIQKGIPFSAYGEVFFILIQGLILVAITYYYSQPVGTATWIRALLYC-AIAPTILAGQINPVLFETIYACQHI-TFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPQCCYGLY-MGALMNGIV 620
            CL  LLSK LG  IVA S  VKLPQI KIL  +SA G+S  +  LE+VA T  + YSI    PFS++GE  F+ +Q + +  +  +Y    G      ALL C A     L   + P+   T+    ++   +  ++ Q   N+ N  TGQLS +T  M FGG++ R+FTS+QE       G++ + +L NG++
Sbjct:   37 CLKILLSKGLGLGIVAGSLLVKLPQIFKILGAKSAEGLSLQSVMLELVALTGTVIYSITNNFPFSSWGEALFLTLQTITICLLVLHYR---GDTVKGVALLACYATLLLALLSPLTPLAVVTMLQASNVPAVVVGKLLQAATNYHNGHTGQLSAITVFMLFGGSLARIFTSVQETGDPLMAGVFVVSSLCNGLI 227          
BLAST of FC923631 vs. ExPASy Swiss-Prot
Match: MPU1_DROME (Mannose-P-dolichol utilization defect 1 protein homolog OS=Drosophila melanogaster GN=CG3792 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 8.366e-22
Identity = 64/179 (35.75%), Postives = 99/179 (55.31%), Query Frame = 3
Query:   33 FPEKDCLLPLLSKVLGYLIVALSTTVKLPQILKILKHRSASGISATTFELEVVAATIGLGYSIQKGIPFSAYGEVFFILIQGLILVAITYYYSQPVGTATWIRALLYCAIAPTILAGQINP--VLFETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQE 563
            F +  C   LLSK LG  I+A S  VK+PQ+LKIL  +S  GI+     L+++A +  L Y+   G PFSA+G+  F+ IQ + +  +  +++     +     L+   +   +L   + P  VLF TI +C     L  ++ Q + N++  STGQLS  T +M F G++ R+FTSIQE
Sbjct:   27 FLDVPCFKALLSKGLGLAIIAGSVLVKVPQVLKILNSKSGEGINIVGVVLDLLAISFHLSYNFMHGYPFSAWGDSTFLAIQTVTIAVLVLFFNGRKAQSGLF--LVGYVVLMYVLNSGLTPMSVLF-TIQSCNIPILLVGKLSQAYTNYQAGSTGQLSAATVIMMFAGSVARIFTSIQE 202          
BLAST of FC923631 vs. ExPASy Swiss-Prot
Match: MPU1_CAEEL (Mannose-P-dolichol utilization defect 1 protein homolog OS=Caenorhabditis elegans GN=F38E1.9 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.611e-18
Identity = 58/192 (30.21%), Postives = 101/192 (52.60%), Query Frame = 3
Query:   48 CLLPLLSKVLGYLIVALSTTVKLPQILKILKHRSASGISATTFELEVVAATIGLGYSIQKGIPFSAYGEVFFILIQGLILVAITYYYSQPVGTATWIRALLYCAIAPTILAGQINPVLFETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPQCCYGLY-MGALMNGIV 620
            C   +LS+ LG+ I   S  + +PQILKI   RSA GISA +  L +V A     YS + G  FS +G+ FF+ +Q +I++   + +S     +     ++  A+A  +++  I       +        + +++ QI +N++ +STGQLS ++  + F G + RVFTS+Q+         Y   A++NG++
Sbjct:   28 CPKAVLSRGLGFAITLGSILLFVPQILKIQAARSAQGISAASQLLALVGAIGTASYSYRSGFVFSGWGDSFFVAVQLVIIILQIFLFSGQTMLSVGFLGIV-SAVAYGVVSKSIPMQTLTAVQTAGIPIVVVSKLLQISQNYRAQSTGQLSLISVFLQFAGTLARVFTSVQDTGDMLLIVSYSTAAVLNGLI 218          
The following BLAST results are available for this feature:
BLAST of FC923631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
MPU1_ARATH6.104e-7363.24Mannose-P-dolichol utilization defect 1 protein ho... [more]
MPU1_HUMAN5.240e-2435.75Mannose-P-dolichol utilization defect 1 protein OS... [more]
MPU1_MOUSE1.525e-2335.23Mannose-P-dolichol utilization defect 1 protein OS... [more]
MPU1_CRIGR1.525e-2337.63Mannose-P-dolichol utilization defect 1 protein OS... [more]
MPU1_DROME8.366e-2235.75Mannose-P-dolichol utilization defect 1 protein ho... [more]
MPU1_CAEEL5.611e-1830.21Mannose-P-dolichol utilization defect 1 protein ho... [more]
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Properties
Property NameValue
Genbank descriptionC31707C07EF StrClemenN Citrus clementina cDNA clone C31707C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923631 ID=FC923631; Name=FC923631; organism=Citrus clementina; type=EST; length=622bp
CTGCGTGNGCCGGATCTCTGCGAGACGGCAAATTTCCAGAGAAAGATTGT
TTACTGCCTCTCCTTTCGAAGGTCCTCGGCTACTTAATCGTCGCCCTCTC
CACTACCGTCAAACTCCCTCAGATATTGAAAATCTTGAAGCATAGAAGTG
CAAGTGGGATTAGCGCCACTACCTTCGAGCTTGAAGTAGTTGCGGCCACT
ATTGGTCTGGGGTATTCTATTCAGAAAGGGATTCCCTTTTCAGCTTATGG
GGAGGTGTTCTTTATTTTGATCCAAGGATTAATTTTAGTTGCTATAACTT
ACTACTATTCACAACCAGTTGGTACCGCAACGTGGATCAGGGCACTGCTA
TATTGTGCTATAGCACCAACCATTTTAGCTGGTCAAATTAATCCCGTTCT
TTTTGAAACTATATATGCATGCCAGCATATCACATTTTTATCTGCCAGGG
TCCCTCAAATATGGAAGAACTTTAAAAACAAAAGTACCGGACAGCTCAGC
TTCTTGACATGTCTCATGAGTTTTGGTGGTGCCATGGTGAGAGTTTTTAC
AAGCATCCAAGAAAAAGCTCCACAATGTTGTTATGGGCTCTACATGGGTG
CCTTGATGAATGGGATCGTCCT
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