FC923634

Overview
NameFC923634
Unique NameFC923634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC923634 vs. ExPASy Swiss-Prot
Match: LTRA_LACLM (Group II intron-encoded protein ltrA OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=ltrA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.660e-13
Identity = 49/158 (31.01%), Postives = 80/158 (50.63%), Query Frame = 3 
Query:  279 DRIVTNLTSYIRRFELWVLAYQKVYADETGTYIPRSAIQKSALEDLLALRNAVLDDRFKWGARLQFFIKSPRDKTDYESLSKRKIKAILTTTQPAP-----FQDKIVQEVLFMILEPIYESRFSQKSYAFRPGRNAHTVLRVIRRNFAGYLWYIKGGL 737
            D + T L  Y+ R +++ +AYQ +Y++       + A  K  L+D          D F    +++  I+S +D T Y    +R   A   + +  P     F DK++QE + +ILE IYE  F   S+ FRP R+ HT L+ I+R F G  W+++G +
Sbjct:   20 DEVFTRLYRYLLRPDIYYVAYQNLYSN-------KGASTKGILDDTA--------DGFS-EEKIKKIIQSLKDGTYYPQPVRRMYIAKKNSKKMRPLGIPTFTDKLIQEAVRIILESIYEPVFEDVSHGFRPQRSCHTALKTIKREFGGARWFVEGDI 161
[Close]
BLAST of FC923634 vs. ExPASy Swiss-Prot
Match: LTRA_LACLC (Group II intron-encoded protein ltrA OS=Lactococcus lactis subsp. cremoris GN=ltrA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.660e-13
Identity = 49/158 (31.01%), Postives = 80/158 (50.63%), Query Frame = 3 
Query:  279 DRIVTNLTSYIRRFELWVLAYQKVYADETGTYIPRSAIQKSALEDLLALRNAVLDDRFKWGARLQFFIKSPRDKTDYESLSKRKIKAILTTTQPAP-----FQDKIVQEVLFMILEPIYESRFSQKSYAFRPGRNAHTVLRVIRRNFAGYLWYIKGGL 737
            D + T L  Y+ R +++ +AYQ +Y++       + A  K  L+D          D F    +++  I+S +D T Y    +R   A   + +  P     F DK++QE + +ILE IYE  F   S+ FRP R+ HT L+ I+R F G  W+++G +
Sbjct:   20 DEVFTRLYRYLLRPDIYYVAYQNLYSN-------KGASTKGILDDTA--------DGFS-EEKIKKIIQSLKDGTYYPQPVRRMYIAKKNSKKMRPLGIPTFTDKLIQEAVRIILESIYEPVFEDVSHGFRPQRSCHTALKTIKREFGGARWFVEGDI 161
The following BLAST results are available for this feature:
BLAST of FC923634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LTRA_LACLM2.660e-1331.01Group II intron-encoded protein ltrA OS=Lactococcu... [more]
LTRA_LACLC2.660e-1331.01Group II intron-encoded protein ltrA OS=Lactococcu... [more]
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Properties
Property NameValue
Genbank descriptionC31707C10EF StrClemenN Citrus clementina cDNA clone C31707C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923634 ID=FC923634; Name=FC923634; organism=Citrus clementina; type=EST; length=751bp
GATTTTCAAAATCCAAAATTCGAGCTGAAGTGCAGCCAGAAACCATTTCA
ATTATCAACCATCGTATTCTCACAAATCACAATCTTGTCTCTGCCACTAT
CTTCCATCACCAAGTAAACCCACTAAACCCTAAGTCAAATGGGTTCTCAT
TTTTTCGCTGTCTTTCGTTCTATCCGATGCAGCGGCGTGCACCGGATCCT
GATGACCCAACAAACCTGATGAAAGAAGATGGTGTCTCAGTTTGTTCACA
GATGTGGATTGAAAATTTTCGCGAACCCGATAGGATTGTTACCAATTTAA
CGTCTTATATTCGTAGGTTTGAGTTGTGGGTATTAGCTTATCAAAAAGTG
TATGCTGATGAAACGGGCACGTATATTCCTCGTAGTGCTATTCAGAAATC
AGCATTAGAGGATTTGTTAGCTTTAAGAAATGCTGTTCTTGATGATAGGT
TTAAATGGGGTGCTAGGTTACAGTTCTTTATAAAATCGCCTAGAGATAAG
ACTGATTATGAATCTTTATCTAAGAGGAAGATTAAGGCCATATTGACTAC
AACACAACCAGCCCCATTTCAGGACAAGATAGTTCAGGAGGTGTTGTTTA
TGATTTTGGAGCCAATATATGAGTCAAGGTTTTCACAAAAGTCGTATGCG
TTTAGGCCGGGGAGGAATGCACACACGGTATTGAGGGTGATTAGAAGGAA
TTTTGCAGGGTATTTGTGGTATATAAAAGGGGGATTGAGTACAGTTTTGG
A
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