FC923635
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3) HSP 1 Score: 338.961 bits (868), Expect = 1.517e-92 Identity = 176/202 (87.13%), Postives = 183/202 (90.59%), Query Frame = 3 Query: 3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 608 V QI+ LIE AEQDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA CTLLRL+SKVDAIK TLDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLS+DN K+GYNAATG YEDLMAAGIIDPTKVVRCCLEHA+SVAKTFLMSDCVVVEIKEPEP +P GNPMDNSGYGY Sbjct: 400 VTQIKNLIEQAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEP-VPVGNPMDNSGYGY 600
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2) HSP 1 Score: 330.487 bits (846), Expect = 5.394e-90 Identity = 174/201 (86.57%), Postives = 181/201 (90.05%), Query Frame = 3 Query: 3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 605 V+QI+ IE AEQ+YE+EKL+ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA CTLLRL+SKVDAIK+TL NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLSSDN KYGYNAATG YEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE A P GNPMDNSGYG Sbjct: 394 VSQIKNQIEAAEQEYEKEKLSERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPKYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPESA-PVGNPMDNSGYG 593
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1) HSP 1 Score: 324.324 bits (830), Expect = 3.866e-88 Identity = 167/202 (82.67%), Postives = 182/202 (90.10%), Query Frame = 3 Query: 3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 608 VAQI+ LIE AEQDYE+EKLNERIAKL+GGVAVIQVGAQTETELKEKKLRVEDALNATKAA CTLLRL++KVDAIK+TL+NDE+KVGA+IV+RALCYPLKLIAKNAGVNGSVV+EKVLS+DN K+GYNAATG YEDLMAAGIIDPTKVVRCCLEHA+SVAKTFL SD VVVEIKEPE A P NPMDNSG+GY Sbjct: 299 VAQIKNLIEAAEQDYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAAKVDAIKDTLENDEQKVGAEIVRRALCYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVEIKEPE-AAPLANPMDNSGFGY 499
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 313.153 bits (801), Expect = 8.911e-85 Identity = 163/187 (87.17%), Postives = 169/187 (90.37%), Query Frame = 3 Query: 3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEP 563 V QI+ LIE AEQDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA CTLLRL+SKVDAIK LDNDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLS+DN K+GYNAATG YEDLMAAGIIDPTKVVRCCLEHA+SVAKTFLMSDCVVVEIKEPEP Sbjct: 400 VTQIKNLIEQAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKAALDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEP 586
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: RUBC_CHLRE (RuBisCO large subunit-binding protein subunit beta-2 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 254.988 bits (650), Expect = 2.880e-67 Identity = 137/195 (70.26%), Postives = 155/195 (79.49%), Query Frame = 3 Query: 3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS-DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAG 578 V QIR L EQ+YE+EKLNERIA+LSGGVA+IQVGAQTETELKEKKLRVEDALNATKAA CTLLRLS KVD+IKETL N+E+K+GADI+KRAL YP+KLIA NAG NGSVV ++V+ + D YGYNAAT +EDLM AGIIDPTKVVRC LE+A SVAKTFL++D VV EI KE PA AG Sbjct: 61 VKQIRNLAAETEQEYEKEKLNERIARLSGGVAIIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVIGGGCTLLRLSQKVDSIKETLSNEEQKMGADIIKRALSYPIKLIANNAGTNGSVVMQRVMDNIDQPYYGYNAATDTFEDLMEAGIIDPTKVVRCSLENAVSVAKTFLLADVVVTEIPEKEKAPAPAAG 255
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: RUBB_CHLRE (RuBisCO large subunit-binding protein subunit beta-1 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 240.736 bits (613), Expect = 5.621e-63 Identity = 129/203 (63.55%), Postives = 155/203 (76.35%), Query Frame = 3 Query: 3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS-DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 608 V QIR L +QDYEREKL ERIA+LSGGVA+IQVGAQTETELKEKKLRVEDALNAT+AA CTLLRLS KVD IK + + E+++GADI+KRALCYP+KLIA+NAGVNGSVV +V+ + D YGYNAAT ++E+LM GIIDP+KVVRC +E+A SVAKTFL++D VV E+KE E A NP+ G+ Sbjct: 230 VKQIRNLQMQTDQDYEREKLQERIARLSGGVAIIQVGAQTETELKEKKLRVEDALNATRAAVEEGVVPGGGCTLLRLSEKVDVIKRRMTDPEQQMGADIIKRALCYPIKLIAQNAGVNGSVVMNEVMKNLDRPHYGYNAATDSFENLMETGIIDPSKVVRCSMENAVSVAKTFLLADVVVTELKEIE-AGAKPNPVAPGAAGF 431
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH602_SYNP6 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL2 PE=3 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 4.464e-52 Identity = 110/199 (55.28%), Postives = 140/199 (70.35%), Query Frame = 3 Query: 3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 599 +AQIR +E + DY+REKL ERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AA TLL L+S + +++ +L +EK+G +IV RAL PL+ IA NAG GSVV EK+ D +GYNA TG YEDL+A+GI+DP KVVR L+ A+SVA L ++ +VV+ EPEPAMPAG M G Sbjct: 345 IAQIRRSLEETDSDYDREKLQERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAIEEGVVPGGGTTLLHLASALTSLQASLTVADEKLGVEIVARALEAPLRQIADNAGAEGSVVVEKLRDKD-FNFGYNALTGQYEDLVASGILDPAKVVRSALQDAASVASLILTTEVLVVDQPEPEPAMPAGGDMGGMG 542
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2) HSP 1 Score: 203.371 bits (516), Expect = 9.945e-52 Identity = 113/199 (56.78%), Postives = 142/199 (71.36%), Query Frame = 3 Query: 3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 599 +AQIR +E + +Y+ EKL ERIAKL+GG+AVI+VGA TETELK++KLR+EDALNATKAA TL+ L+SKVD IK+ D +EEK+GADIVKRAL PL+ IA NAGV GSV+ +V SD GYNAATG +EDL+AAGIIDP KVVR L++A+S+A L ++ +VVE E + A PA M G Sbjct: 344 IAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIKKNFD-EEEKIGADIVKRALEAPLRQIADNAGVEGSVIVSRVKDSD-FNTGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKAAAPADAGMGGMG 540
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH602_ANASP (60 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 7120) GN=groL2 PE=3 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 2.215e-51 Identity = 112/199 (56.28%), Postives = 141/199 (70.85%), Query Frame = 3 Query: 3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 599 +AQIR +E + +Y+ EKL ERIAKL+GG+AVI+VGA TETELK++KLR+EDALNATKAA TL+ L+SKVD IK+ D +EEK+GADIVKRAL PL+ IA NAG GSV+ +V SD GYNAATG +EDL+AAGIIDP KVVR L++A+S+A L ++ +VVE E + A PA M G Sbjct: 344 IAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIKKNFD-EEEKIGADIVKRALEAPLRQIADNAGAEGSVIVSRVKDSD-FNIGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKSAAPADAGMGGMG 540
BLAST of FC923635 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.893e-51 Identity = 108/190 (56.84%), Postives = 139/190 (73.16%), Query Frame = 3 Query: 3 VAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 572 +AQIR + ++ DY++EKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNATKAA TL+ LS+KV+ +K +L+N+EEK+GADIV+RAL PL IA N+GV GSV+ EKV S+D GYN TG YEDL+AAGI+DP VVR L++A S+A L ++ VVVE E + A P Sbjct: 344 IAQIRKQLGESDSDYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIHLSTKVEELKGSLNNEEEKIGADIVRRALEAPLNQIANNSGVEGSVIVEKVRSTD-FSVGYNVITGEYEDLIAAGILDPAMVVRSALQNAGSIAGMVLTTEAVVVEKPEKKGAAP 532 The following BLAST results are available for this feature:
BLAST of FC923635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923635 ID=FC923635; Name=FC923635; organism=Citrus clementina; type=EST; length=706bpback to top |