FC923640

Overview
NameFC923640
Unique NameFC923640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7095 contig Ccv1_Contig7095:1..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923640 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.548e-41
Identity = 95/189 (50.26%), Postives = 122/189 (64.55%), Query Frame = 2
Query:  119 MGYGRLQPSSDPGGSSFREDQPGHATSAPQPXXXXXXXXXXXXXXXFALIIASAVSAVLLVGLKTRAVG---PTIGHKPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASEQDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKREDVLTWLS 676
            MGY RL PS   G S+  +  P  ATS P+                 A+++   V   +  G++    G   P +  KPTQAISRTCSK+LYPNLC+ +LL+FPGSLTA E +L+HISFN TLQ FS+ALY +S I+Y QM P VRSA+D CLELLDDSVDAL+R+L SV+++ G +     DV+TWLS
Sbjct:    1 MGYDRLGPS---GPSNPNQKDP--ATSLPE---LQKKTKTKLILFTLAVLVVGVVCFGIFAGIRAVDSGKTEPKLTRKPTQAISRTCSKSLYPNLCIDTLLDFPGSLTADENELIHISFNATLQKFSKALYTSSTITYTQMPPRVRSAYDSCLELLDDSVDALTRALSSVVVVSGDE--SHSDVMTWLS 179          
BLAST of FC923640 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.327e-33
Identity = 81/194 (41.75%), Postives = 112/194 (57.73%), Query Frame = 2
Query:  119 MGYGRLQPSSDPGG---SSFREDQPGHATSAPQPXXXXXXXXXXXXXXXFALIIASAVSAVLLVGLKTRAV----GPTIGHKPTQAISRTCSKTLYPNLCVSSLLNFPGSLTASE-QDLVHISFNMTLQHFSRALYFTSGISYLQMDPHVRSAFDDCLELLDDSVDALSRSLGSVLLLPGGDINKREDVLTWLS 676
            MGY RL PS   G    S+         +++ QP                 L I+  ++A +  G+++R       P +  KP+QAIS+ C  T +P LCV SL++FPGSL AS  +DL+H++ NMTL HFS ALY ++ +S++ M P  RSA+D C+ELLDDSVDALSR+L SV+        K +DV TWLS
Sbjct:    1 MGYERLGPSGATGSVTTSTTTAPILNQVSTSEQPENNNRRSKKKLVVSSIVLAISLILAAAIFAGVRSRLKLNQSVPGLARKPSQAISKACELTRFPELCVDSLMDFPGSLAASSSKDLIHVTVNMTLHHFSHALYSSASLSFVDMPPRARSAYDSCVELLDDSVDALSRALSSVV----SSSAKPQDVTTWLS 190          
The following BLAST results are available for this feature:
BLAST of FC923640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PME61_ARATH9.548e-4150.26Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME34_ARATH7.327e-3341.75Probable pectinesterase/pectinesterase inhibitor 3... [more]
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Properties
Property NameValue
Genbank descriptionC31707D04EF StrClemenN Citrus clementina cDNA clone C31707D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923640 ID=FC923640; Name=FC923640; organism=Citrus clementina; type=EST; length=677bp
GATTTCGCACTTCCACATATAATTTGATTAATTATATTGTATGCAAACCC
TTCACATTCTCCTCGAAGACCCAGCCAAACAAAAAAGACTAACTGAGGTC
ATCGGTACTTGAAATCTGATGGGTTACGGCAGGCTCCAGCCCTCCTCCGA
CCCCGGGGGTTCTTCATTCCGCGAGGACCAACCCGGGCATGCCACGTCGG
CACCCCAGCCTTCTTCCCGCAGCAGGAAGAAGCTCATCCTCCTCTCCGTC
CTCTCATTCGCATTAATCATCGCCTCCGCCGTCTCCGCCGTCCTCCTCGT
GGGCCTCAAGACGCGTGCCGTGGGCCCCACCATCGGCCACAAGCCCACCC
AGGCCATTTCCCGCACGTGCAGCAAGACCCTCTACCCGAACCTCTGCGTC
AGCTCGCTCCTCAACTTCCCGGGCTCGCTCACCGCCTCCGAGCAGGACCT
CGTCCACATTTCGTTCAACATGACGCTGCAGCACTTCAGCAGGGCCCTGT
ATTTCACCTCCGGTATCTCCTATCTCCAGATGGACCCACACGTGCGCTCC
GCATTCGACGACTGCCTCGAGCTCCTGGACGACTCCGTGGACGCGCTCTC
ACGCTCCCTCGGCTCCGTGCTGCTGCTACCCGGAGGCGATATTAATAAAA
GAGAGGACGTGCTGACGTGGCTCAGCG
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