FC923642

Overview
NameFC923642
Unique NameFC923642
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: AFC2_ARATH (Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 5.633e-84
Identity = 148/177 (83.62%), Postives = 163/177 (92.09%), Query Frame = 3
Query:   87 MEMERVTEFPFSNLDRRPRKRARLGWDV-PQVPKAQVGLFCGQEVGNVTSFAPPRAPSDHVTSSSLFVKGVARNGSPPWREDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIV 614
            MEMERV EFP +++DRRPRKRARLGWDV PQ  KAQVG+FCGQE+GN++SFA   APSD+  SSSL VKGVARNGSPPWREDDKDGHY+F LG++LT RYKI+SKMGEGTFGQVLECWDRERKEMVA+KIVRG+KKYREAAMIEIE+LQQL KHDKGGNRCVQIRNWFDYRNHICIV
Sbjct:    1 MEMERVHEFPHTHMDRRPRKRARLGWDVLPQATKAQVGMFCGQEIGNISSFASSGAPSDN--SSSLCVKGVARNGSPPWREDDKDGHYIFELGDDLTPRYKIYSKMGEGTFGQVLECWDRERKEMVAVKIVRGVKKYREAAMIEIEMLQQLGKHDKGGNRCVQIRNWFDYRNHICIV 175          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: AFC1_ARATH (Serine/threonine-protein kinase AFC1 OS=Arabidopsis thaliana GN=AFC1 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.561e-54
Identity = 109/189 (57.67%), Postives = 132/189 (69.84%), Query Frame = 3
Query:   78 AAIMEMERVTEFPFSNLDRRPRKRARLGWDV--PQVPKA------QVGLFCGQEV--GNVTSFAPPRAPSDHVTSSSLFVKGVARNGSPPWREDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIV 614
            A I+E +R  EFP   +D+RPRKR RL WD   P +P        Q  L+ G E   G V +F  P          ++F  G+ R GSPPWR DDKDGHY+F +G+ LT RY+I SKMGEGTFGQVLEC+D + KE+VAIK++R I KYREAAMIEI+VLQ+L +HD GG+RCVQIRNWFDYRNHICIV
Sbjct:   14 AMILETQRNVEFPHRIVDKRPRKRPRLTWDAAPPLLPPPPPPTVFQPPLYYGPEFASGLVPNFVYP----------NMFYNGLPRQGSPPWRPDDKDGHYVFVVGDTLTPRYQILSKMGEGTFGQVLECFDNKNKEVVAIKVIRSINKYREAAMIEIDVLQRLTRHDVGGSRCVQIRNWFDYRNHICIV 192          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: AFC3_ARATH (Serine/threonine-protein kinase AFC3 OS=Arabidopsis thaliana GN=AFC3 PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.270e-43
Identity = 93/171 (54.39%), Postives = 115/171 (67.25%), Query Frame = 3
Query:  117 FSNLDR-RPRKRARLGWD-VPQVPKAQVGLFCGQEVGNVTSFAPPRAPSDHVTSSSLFVKGVARNG---SPPWREDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIV 614
            F ++D+ R RKR R+ WD  P  P+A+  +                            +KG   +G   SPP R+DD+DGHY+F+L +NLT RYKI SKMGEGTFG+VLECWDR+ KE VAIKI+R IKKYR+AAMIEI+VLQ+L K DKG  RCVQ++NWFDYRNHICIV
Sbjct:    6 FESMDKERVRKRPRMTWDEAPAEPEAKRAV----------------------------IKGHGSDGRILSPPLRDDDRDGHYVFSLRDNLTPRYKILSKMGEGTFGRVLECWDRDTKEYVAIKIIRSIKKYRDAAMIEIDVLQKLVKSDKGRTRCVQMKNWFDYRNHICIV 148          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: LKH1_SCHPO (Dual specificity protein kinase lkh1 OS=Schizosaccharomyces pombe GN=lkh1 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.330e-21
Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 3
Query:  327 DDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHD-KGGNRCVQIRNWFDYRNHICIVS 617
            DD DGHY         +RY +   +G GTFG+V++C+D+      AIK+ R I KYREA++IE+ VLQ +A  D    N+C+Q+R++FDYR HICIV+
Sbjct:  344 DDDDGHYKVVPNSKFANRYTVVRLLGHGTFGKVIQCYDQSTGRHCAIKVTRAIPKYREASLIELRVLQTIAHSDPTNENKCIQLRDYFDYRKHICIVT 441          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: DOA_DROME (Serine/threonine-protein kinase Doa OS=Drosophila melanogaster GN=Doa PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.576e-20
Identity = 46/101 (45.54%), Postives = 71/101 (70.30%), Query Frame = 3
Query:  315 PWREDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKG-GNRCVQIRNWFDYRNHICIV 614
            P  +DD DGH ++  G+ L  RYKI + +GEGTFG+V++  D ER   +A+KI++ ++KYREAA +EI  L+++A+ D    + CV++ +WFDY  H+CIV
Sbjct:  457 PVIQDDADGHLIYHTGDILHHRYKIMATLGEGTFGRVVKVKDMERDYCMALKIIKNVEKYREAAKLEINALEKIAQKDPHCDHLCVKMIDWFDYHGHMCIV 557          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: CLK3_RAT (Dual specificity protein kinase CLK3 OS=Rattus norvegicus GN=Clk3 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  324 EDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRER-KEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICI 611
            EDDK+GH +  +G+ L  RY+I   +GEGTFG+V+EC D  R K  VA+KI+R + KYREAA +EI VL+++ + DK     CV + +WF++  H+CI
Sbjct:  137 EDDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCI 234          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: CLK3_MOUSE (Dual specificity protein kinase CLK3 OS=Mus musculus GN=Clk3 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  324 EDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRER-KEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICI 611
            EDDK+GH +  +G+ L  RY+I   +GEGTFG+V+EC D  R K  VA+KI+R + KYREAA +EI VL+++ + DK     CV + +WF++  H+CI
Sbjct:  285 EDDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCI 382          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: CLK3_HUMAN (Dual specificity protein kinase CLK3 OS=Homo sapiens GN=CLK3 PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  324 EDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRER-KEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICI 611
            EDDK+GH +  +G+ L  RY+I   +GEGTFG+V+EC D  R K  VA+KI+R + KYREAA +EI VL+++ + DK     CV + +WF++  H+CI
Sbjct:  285 EDDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCI 382          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: CLK3_BOVIN (Dual specificity protein kinase CLK3 OS=Bos taurus GN=CLK3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  324 EDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRER-KEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICI 611
            EDDK+GH +  +G+ L  RY+I   +GEGTFG+V+EC D  R K  VA+KI+R + KYREAA +EI VL+++ + DK     CV + +WF++  H+CI
Sbjct:  137 EDDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCI 234          
BLAST of FC923642 vs. ExPASy Swiss-Prot
Match: CLK2_HUMAN (Dual specificity protein kinase CLK2 OS=Homo sapiens GN=CLK2 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 46/98 (46.94%), Postives = 70/98 (71.43%), Query Frame = 3
Query:  324 EDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRER-KEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGG-NRCVQIRNWFDYRNHICI 611
            EDD +GH ++ +G+ L  RY+I S +GEGTFG+V++C D  R    VA+KI++ ++KY+EAA +EI VL+++ + D    N CVQ+ +WFDY  H+CI
Sbjct:  144 EDDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCI 241          
The following BLAST results are available for this feature:
BLAST of FC923642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
AFC2_ARATH5.633e-8483.62Serine/threonine-protein kinase AFC2 OS=Arabidopsi... [more]
AFC1_ARATH3.561e-5457.67Serine/threonine-protein kinase AFC1 OS=Arabidopsi... [more]
AFC3_ARATH1.270e-4354.39Serine/threonine-protein kinase AFC3 OS=Arabidopsi... [more]
LKH1_SCHPO2.330e-2146.94Dual specificity protein kinase lkh1 OS=Schizosacc... [more]
DOA_DROME2.576e-2045.54Serine/threonine-protein kinase Doa OS=Drosophila ... [more]
CLK3_RAT3.364e-2047.96Dual specificity protein kinase CLK3 OS=Rattus nor... [more]
CLK3_MOUSE3.364e-2047.96Dual specificity protein kinase CLK3 OS=Mus muscul... [more]
CLK3_HUMAN3.364e-2047.96Dual specificity protein kinase CLK3 OS=Homo sapie... [more]
CLK3_BOVIN3.364e-2047.96Dual specificity protein kinase CLK3 OS=Bos taurus... [more]
CLK2_HUMAN3.364e-2046.94Dual specificity protein kinase CLK2 OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionC31707D06EF StrClemenN Citrus clementina cDNA clone C31707D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923642 ID=FC923642; Name=FC923642; organism=Citrus clementina; type=EST; length=695bp
ATTCTTATCTTCGTTATTTTATTCGTTCGTTTCAATCGCATCAAGATCTC
GATCTCTCTCTTATTTCCTCGCCGTGAGCTGCGATCATGGAGATGGAGCG
CGTGACGGAGTTTCCTTTTTCGAATCTGGATCGGCGTCCTCGTAAGCGAG
CGCGTTTGGGCTGGGACGTGCCTCAGGTACCGAAGGCTCAGGTAGGATTA
TTTTGTGGACAAGAGGTTGGGAATGTAACAAGCTTTGCACCTCCAAGAGC
TCCCTCAGACCATGTCACTAGTTCTTCTCTATTTGTAAAGGGAGTGGCTC
GAAATGGTTCTCCCCCATGGCGTGAGGATGACAAAGATGGCCATTATATG
TTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAGATTCACAGCAAAAT
GGGTGAAGGAACCTTCGGTCAGGTTTTGGAATGCTGGGATCGTGAGAGGA
AAGAAATGGTAGCCATTAAAATTGTTCGTGGGATCAAGAAATATCGTGAG
GCTGCTATGATAGAAATTGAAGTACTTCAACAACTTGCAAAACATGATAA
AGGTGGCAACCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAACC
ATATCTGTATTGTAAGTATATGATTGTTTTGTGATGAATTAATTTCCCCA
ATTTACACATAATTTGGGGGTTTAGACTTCTGGATGGATTCAATG
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