FC923643

Overview
NameFC923643
Unique NameFC923643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15337 contig Ccv1_Contig15337:278..975. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: CP21C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial OS=Arabidopsis thaliana GN=CYP21-3 PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.600e-46
Identity = 98/191 (51.31%), Postives = 125/191 (65.45%), Query Frame = 2
Query:    8 LVVTYRHWSHSPRSNEQIGNESSTAEDDAYAVSKKFDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSKDSK-GFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 577
            L   YR W+H  RS     N  S  ED A+   K  DLP  A L+T KG + +ELFKD +P  VD+F+  CQ GYFKG  F  V+K++VIQAG S +  A  +W      R  + TS KHE FM+GT K+K+ + GFE +I +A I DLN+KL VFGRV KG+DVVQEIEEV+TD+ YQPKS + I++VTL
Sbjct:   41 LFSAYRRWTH--RSEIPTHNGRSVLEDAAFPGMKNVDLPRFATLDTGKGSVTIELFKDTAPNVVDQFMKFCQDGYFKGFLFSRVVKHFVIQAGDSAEFDAVKDWALD---RKNIDTSLKHEEFMVGTPKAKNEQGGFEFFIVSAQIKDLNEKLTVFGRVSKGQDVVQEIEEVETDDQYQPKSPIEIMSVTL 226          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPIL2_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhizopus oryzae GN=cyp14 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 52/166 (31.33%), Postives = 89/166 (53.61%), Query Frame = 2
Query:   86 DDAYAVSKKFDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV--KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 577
            D+   + KK     +A + T+ G I VELF D  P+T   FI+L + GY+  + FH  IK ++IQ G         E   +     +++T+ KH+A  + ++  + KD+ G + +IT A  P L+    VFG+VV G DV+ ++E +  DE  +P+ ++ I  + +
Sbjct:  273 DEDEFMYKKIKKKSYARIITNYGNINVELFSDKKPKTCHNFIELAKTGYYNDVIFHRNIKKFMIQGGDPTGTGKGGESIWKRYFPDEIKTTLKHDARGVLSMANRGKDTNGSQFFITYAAAPHLDGLHTVFGKVVGGLDVLSKLESIPVDEKDRPEREIKIKQIQM 438          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPWD1_BOVIN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Bos taurus GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 57/180 (31.67%), Postives = 93/180 (51.67%), Query Frame = 2
Query:   50 NEQIGNESSTAEDDAYAVSKKFDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD-EHYQPKSDVGIINVTLK 580
            NE+   E   A   A    +  D    A+++TS G I ++LF    P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  ++ +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V  + +  +P  DV IIN+T+K
Sbjct:  468 NEKPSKEEVMAATQAEGPKRVSD---SAIIHTSMGDIHIKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 644          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPWD1_PONAB (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Pongo abelii GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 57/180 (31.67%), Postives = 92/180 (51.11%), Query Frame = 2
Query:   50 NEQIGNESSTAEDDAYAVSKKFDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD-EHYQPKSDVGIINVTLK 580
            NE+   E   A   A    +  D    A+++TS G I  +LF    P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  ++ +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V  + +  +P  DV IIN+T+K
Sbjct:  470 NEKPSKEEVMAATQAEGPKRVSD---SAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 646          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPWD1_HUMAN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 57/180 (31.67%), Postives = 92/180 (51.11%), Query Frame = 2
Query:   50 NEQIGNESSTAEDDAYAVSKKFDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD-EHYQPKSDVGIINVTLK 580
            NE+   E   A   A    +  D    A+++TS G I  +LF    P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  ++ +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V  + +  +P  DV IIN+T+K
Sbjct:  470 NEKPSKEEVMAATQAEGPKRVSD---SAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 646          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPWD1_MOUSE (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Mus musculus GN=Ppwd1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 57/180 (31.67%), Postives = 93/180 (51.67%), Query Frame = 2
Query:   50 NEQIGNESSTAEDDAYAVSKKFDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD-EHYQPKSDVGIINVTLK 580
            NE+   E   A   A    +  D    A+++TS G I ++LF    P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  ++ +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V  + +  +P  DV IIN+T+K
Sbjct:  470 NEKPSKEEVMAATQAEGPKRVSD---SAIVHTSMGDIHIKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVSKGMEVVQRIFNVKVNPQTDKPYEDVSIINITVK 646          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: CYP15_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizopus oryzae GN=cyp15 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 53/183 (28.96%), Postives = 89/183 (48.63%), Query Frame = 2
Query:   44 RSNEQIGNESSTAEDDAYAVS--KKFDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEA-FMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTLK 580
            ++   I NE  + E+   A +  +K  L   A++ T+ G I + LF D +P+ V+ F    + GY+  + FH VIK ++IQ G         E         +     +H+  + +    +  ++ G + +IT AP   L++K  VFGRV  G DVV  IE    D+  +P  D+ IIN+ ++
Sbjct:  448 KAERDIFNEKPSREEQTVAATQERKQILGTSAIIRTTSGDIHMRLFPDAAPKAVENFTTHAKNGYYDNLIFHRVIKGFMIQTGCPFGDGTGGESIWGDDFEDEFSREFRHDRPYTVSMANAGPNTNGSQFFITVAPTTWLDNKHSVFGRVTAGMDVVHSIESAKVDKTNKPLDDIKIINIDIR 630          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: CYP1_BRUMA (Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 51/152 (33.55%), Postives = 82/152 (53.95%), Query Frame = 2
Query:  152 GYIIVELFKDGSPETVDKFIDLC-----------QKGYFKGMSFHHVIKNYVIQAGH-SKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV-KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 568
            G I++EL+ D +P T + F+ LC           +  ++KG +FH VIKN++IQ G  +K      E    G    +       E F++    K  ++ G + +ITT P P LN+  +VFG+VV G++VV +IE + T+   +P +DV I+N
Sbjct:   21 GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILN 172          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 49/148 (33.11%), Postives = 78/148 (52.70%), Query Frame = 2
Query:  140 NTSKGYIIVELFKDGSPETVDKFIDLC--QKG--------YFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKS 550
            NT  G ++ EL+ D  P+T + F  LC  +KG        ++KG SFH VIKN+++Q G           +  G+  +      KH+   +    + K++ G + +ITTA  P LN    VFG VV+G D+V+++E  +TD   +PK+
Sbjct:   17 NTPLGRVVFELYNDIVPKTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIKNFMVQGGDFTHGTGIGGESIYGRTFNDENFLVKHKIGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRPKA 164          
BLAST of FC923643 vs. ExPASy Swiss-Prot
Match: CYP9_SCHPO (Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosaccharomyces pombe GN=cyp9 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 44/151 (29.14%), Postives = 80/151 (52.98%), Query Frame = 2
Query:  131 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 577
            A+++T++G I ++L+ + +P+ V  F    + GY+    FH +IKN++IQ G         E   +     ++  + KH+  F +    S  ++ G + +ITT   P L+ K  +F R   G DVV  IE+ +TD++ +P     IIN+++
Sbjct:  457 AIIHTTQGDISIKLYPEEAPKAVQNFTTHAENGYYDNTIFHRIIKNFMIQGGDPLGDGTGGESIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAGLDVVHRIEQGETDKYDRPLEPTKIINISI 607          
The following BLAST results are available for this feature:
BLAST of FC923643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CP21C_ARATH3.600e-4651.31Peptidyl-prolyl cis-trans isomerase CYP21-3, mitoc... [more]
PPIL2_RHIOR5.417e-1831.33Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhiz... [more]
PPWD1_BOVIN7.074e-1831.67Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_PONAB1.576e-1731.67Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_HUMAN1.576e-1731.67Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_MOUSE2.688e-1731.67Peptidylprolyl isomerase domain and WD repeat-cont... [more]
CYP15_RHIOR2.972e-1628.96Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizo... [more]
CYP1_BRUMA5.070e-1633.55Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia ma... [more]
PPID_DICDI4.292e-1533.11Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
CYP9_SCHPO7.321e-1529.14Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosac... [more]

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Properties
Property NameValue
Genbank descriptionC31707D08EF StrClemenN Citrus clementina cDNA clone C31707D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923643 ID=FC923643; Name=FC923643; organism=Citrus clementina; type=EST; length=697bp
GTTGTGCTTAGTTGTCACATATAGACATTGGTCGCATTCACCAAGGTCAA
ATGAACAAATAGGGAATGAATCGTCAACCGCTGAGGATGATGCCTATGCG
GTTTCAAAGAAGTTTGATCTTCCTGGCCATGCTGTTTTAAATACATCTAA
AGGTTATATAATAGTGGAACTCTTCAAAGATGGTTCACCTGAAACCGTGG
ATAAATTTATTGACTTGTGTCAAAAGGGGTACTTCAAAGGTATGTCTTTC
CATCATGTGATAAAAAACTATGTCATTCAAGCTGGGCATTCCAAGGATCT
TGCAGCTGCTGATGAATGGACATCAAGAGGGAAGATCCGCAGTCAGCTGA
GGACCAGTCCGAAGCATGAGGCGTTTATGATTGGAACTGTAAAATCTAAA
GACAGCAAAGGATTTGAGCTATACATTACAACTGCACCAATACCAGATTT
AAATGATAAGCTTATTGTGTTTGGACGAGTAGTGAAGGGTGAGGATGTGG
TGCAGGAAATTGAAGAGGTGGATACAGATGAGCACTATCAGCCTAAGTCA
GATGTAGGGATCATCAATGTGACACTAAAGCATGCGATATGAGGATGTAT
GCTAAGCTACCGAAAAGATTTTACACCTAGCCAAGTTTCTTGTTGTGCTA
TTGATTTTCGTATTAATCTTGTATTGCTGCTGCTAGAACGCTTGGTT
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