FC923644
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.682e-57 Identity = 70/118 (59.32%), Postives = 80/118 (67.80%), Query Frame = 1
Query: 118 LRATPFLGQSRTTANALKDVVPMGNAKYTMVISW*P*PTPSAFLSLFVSVFREIH*RYCCVQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
++ATPFLGQ++ AN L+DVV MG+A++TM N+LWYGPDRVKYLGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVI
Sbjct: 14 VKATPFLGQTKN-ANPLRDVVAMGSARFTM--------------------------------SNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVI 98 HSP 2 Score: 108.227 bits (269), Expect = 3.682e-57 Identity = 47/52 (90.38%), Postives = 51/52 (98.08%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIHGRWAMLGALGCI PEVLEKW++VDFKEPVWFKAG+QIFS+GGLDYLGNP
Sbjct: 97 VIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNP 148
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.296e-52 Identity = 67/117 (57.26%), Postives = 73/117 (62.39%), Query Frame = 1
Query: 127 TPFL-GQSRT-TANALKDVVPMGNAKYTMVISW*P*PTPSAFLSLFVSVFREIH*RYCCVQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
TPFL GQ R +A+ L+D+ N + TM GN+LWYGPDRVKYLGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFARNRALEVI
Sbjct: 17 TPFLSGQGRAASASPLRDIAAATNGRITM--------------------------------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVI 101 HSP 2 Score: 104.76 bits (260), Expect = 3.296e-52 Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIHGRWAMLGALGC+ PEVL+KW+ V+FKEPVWFKAG+QIFSEGGLDYLGNP
Sbjct: 100 VIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNP 151
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.585e-42 Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 1
Query: 313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
+WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVI
Sbjct: 46 IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVI 98 HSP 2 Score: 85.1149 bits (209), Expect = 2.585e-42 Identity = 41/52 (78.85%), Postives = 43/52 (82.69%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIH RWAMLGALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYLGNP
Sbjct: 97 VIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNP 147
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.585e-42 Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 1
Query: 313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
+WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVI
Sbjct: 46 IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVI 98 HSP 2 Score: 85.1149 bits (209), Expect = 2.585e-42 Identity = 41/52 (78.85%), Postives = 43/52 (82.69%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIH RWAMLGALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYLGNP
Sbjct: 97 VIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNP 147
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 3.647e-41 Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 1
Query: 298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
VQ + WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct: 45 VQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 102 HSP 2 Score: 80.4925 bits (197), Expect = 3.647e-41 Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct: 101 VIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 151
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 8.068e-41 Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1
Query: 313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
+WYGPDR KYLGPFS Q PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVI
Sbjct: 48 IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVI 100 HSP 2 Score: 82.4185 bits (202), Expect = 8.068e-41 Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIH RWAMLGALGC PE+LEK V F E VWFKAG+QIF+EGGLDYLGNP
Sbjct: 99 VIHSRWAMLGALGCTFPELLEK-NGVKFGEAVWFKAGSQIFAEGGLDYLGNP 149
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.051e-40 Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1
Query: 313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
+WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVI
Sbjct: 48 IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVI 100 HSP 2 Score: 82.8037 bits (203), Expect = 1.051e-40 Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIH RWAMLGALGC+ PE+L K V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct: 99 VIHCRWAMLGALGCVFPEILSK-NGVTFGEAVWFKAGSQIFSEGGLDYLGNP 149
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.051e-40 Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1
Query: 313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
+WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVI
Sbjct: 48 IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVI 100 HSP 2 Score: 82.8037 bits (203), Expect = 1.051e-40 Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIH RWAMLGALGC+ PE+L K V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct: 99 VIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.051e-40 Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1
Query: 313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
+WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVI
Sbjct: 48 IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVI 100 HSP 2 Score: 82.8037 bits (203), Expect = 1.051e-40 Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIH RWAMLGALGC+ PE+L K V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct: 99 VIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
BLAST of FC923644 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.051e-40 Identity = 47/58 (81.03%), Postives = 49/58 (84.48%), Query Frame = 1
Query: 298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVI 471
V WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVI
Sbjct: 41 VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVI 98 HSP 2 Score: 82.0333 bits (201), Expect = 1.051e-40 Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 2
Query: 557 VIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP 712
VIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYLGNP
Sbjct: 97 VIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNP 147 The following BLAST results are available for this feature:
BLAST of FC923644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923644 ID=FC923644; Name=FC923644; organism=Citrus clementina; type=EST; length=714bpback to top |