FC923650

Overview
NameFC923650
Unique NameFC923650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10315 contig Ccv1_Contig10315:208..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC923650 vs. ExPASy Swiss-Prot
Match: DR102_ARATH (DNA-damage-repair/toleration protein DRT102 OS=Arabidopsis thaliana GN=DRT102 PE=2 SV=2)

HSP 1 Score: 353.214 bits (905), Expect = 8.186e-97
Identity = 171/247 (69.23%), Postives = 201/247 (81.38%), Query Frame = 1 
Query:    1 VEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDS-----DSSGSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 726
            VED G S YYS G+EVGRRVS+S SSE   RGLV CGTGVGVA+FANK PGV+A TCL+  DA+N RSI+NCNVLA SG+ TS E+A+EI D W+KTPFK+PCPASG +PW   +S F D S++EM  IGK+   DS     D + ++C ICCL KNRE  PV+++PGGSMKI+RE+PTSAIVRFKAGSVEPAHHHTFGHDLVV++GKKSVWNL+K ER DL  GDYLFTPAGDVHRVKY+E+TEFF
Sbjct:   40 VEDTGVSSYYSAGSEVGRRVSASSSSEV--RGLVCCGTGVGVAMFANKFPGVYAATCLSVEDAVNARSISNCNVLAFSGIKTSPETALEIFDAWIKTPFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDETTASCVICCLAKNREFTPVDIMPGGSMKIVRETPTSAIVRFKAGSVEPAHHHTFGHDLVVIKGKKSVWNLSKKERADLVDGDYLFTPAGDVHRVKYHEDTEFF 284
The following BLAST results are available for this feature:
BLAST of FC923650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DR102_ARATH8.186e-9769.23DNA-damage-repair/toleration protein DRT102 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC31707E03EF StrClemenN Citrus clementina cDNA clone C31707E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923650 ID=FC923650; Name=FC923650; organism=Citrus clementina; type=EST; length=726bp
GTGGAAGATCTCGGCACTTCTGATTACTACTCCATCGGCGCCGAGGTCGG
CCGCCGTGTCTCCTCTTCCGATTCCTCCGAAACCACCACTCGCGGCCTCG
TCGCCTGCGGAACCGGAGTCGGCGTCGCAATCTTCGCCAACAAAAACCCC
GGCGTCTTCGCCACGACGTGTCTCACTCCCGCCGACGCCCTCAACACCCG
CTCCATCAACAACTGCAACGTCCTCGCTGTCTCAGGTATGTCCACTTCCA
AAGAATCCGCCGTCGAAATCCTCGACACGTGGCTTAAAACCCCTTTTAAG
GCCCCATGCCCCGCGTCGGGTTTGAAGCCATGGGATGAGAAATTGTCGTG
TTTTTTCGACAAGTCGATGACCGAAATGCCCCTTATTGGTAAAAATGATA
AATTAGATAGTGATTCTAGTGGCAGCACTTGTAGCATATGTTGTTTAGTG
AAGAACAGGGAATTGAATCCTGTGGAAATGATTCCCGGTGGGTCGATGAA
GATTATTAGGGAGAGTCCGACATCGGCCATTGTGAGGTTTAAGGCGGGGA
GTGTGGAGCCCGCGCATCACCATACATTTGGGCATGATCTGGTGGTGCTG
GAAGGGAAGAAGAGTGTGTGGAATCTGACCAAAGGGGAAAGGTTCGATTT
GACTGTTGGGGATTACTTGTTTACGCCGGCTGGTGATGTGCATAGAGTGA
AGTATTACGAAGAGACTGAGTTTTTC
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