FC923655

Overview
NameFC923655
Unique NameFC923655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923655 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 3.048e-51
Identity = 102/207 (49.28%), Postives = 136/207 (65.70%), Query Frame = 1
Query:  127 DVKVLGFWPSPFLMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAW---SSSGPSILPSDPYDRAVARFWAAYVDEK----WFSALRDIGSANGAEAKKAAXXXXXXXXXXXXDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNXVKLLDEVKTPWTVQWAERFCA-DAA 723
            ++K+LG W SP+ +R R+ L +KS+ YE++EENLG KS+LLL SNPVHK +PVL+H  +PV ES +IV+Y+DE W   +   PS++PSDPY+RAVARFWAAYVD+K    W + L   GS    E + AA             AF +CSKGK FFGG+ +GF+D+  G YLGW    +K+   +L+D  +TP    W ERF A DAA
Sbjct:    6 ELKLLGVWSSPYAIRVRVVLNLKSLPYEYVEENLGDKSDLLLASNPVHKSVPVLLHAGRPVNESQVIVQYIDEVWPGGAGGRPSVMPSDPYERAVARFWAAYVDDKVRPAWLAIL--FGSKT-EEERAAAVAQAVAALETLEGAFGECSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAA 209          
BLAST of FC923655 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.791e-43
Identity = 92/204 (45.10%), Postives = 119/204 (58.33%), Query Frame = 1
Query:  115 MAKSDVKVLGFWPSPFLMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAXXXXXXXXXXXXDAFVKCSK-------GKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNXVKLLDEVKTPWTVQWAER 705
            MA  +V +L FWPS F MR RIAL  K ++YE+ EE+L +KS LLL+ NP+HKKIPVLIHN KP+CES+I VEY++E W    P++LPSDPYDRA ARFWA Y+D+K +   R + +  G E + A               F++C K        K +FGG   GF+DIA   Y  W    E         E + P  V WA+R
Sbjct:    1 MANEEVILLDFWPSMFGMRLRIALAEKEIKYEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPNLLPSDPYDRAQARFWADYIDKKLYDFGRKLWTTKGEEQEAAKKD------------FIECLKVLEGALGDKPYFGGESFGFVDIALIGYYSWFYAYETFG--NFSTEAECPKFVAWAKR 190          
BLAST of FC923655 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.161e-42
Identity = 90/204 (44.12%), Postives = 119/204 (58.33%), Query Frame = 1
Query:  115 MAKSDVKVLGFWPSPFLMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAXXXXXXXXXXXXDAFVKCSK-------GKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNXVKLLDEVKTPWTVQWAER 705
            MA  +V +L FWPS F MR RIAL  K ++YE+ +E+L +KS LLL+ NP+HKKIPVLIHN KP+CES+I VEY++E W    PS+LPSDPYDRA ARFWA Y+D+K +   R + +  G E + A               F++C K        + +FGG   GF+DIA   +  W    E         E + P  V WA+R
Sbjct:    1 MANEEVILLDFWPSMFGMRLRIALAEKEIKYEYKQEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPSLLPSDPYDRAQARFWADYIDKKLYDFGRKLWATKGEEQEAAKKD------------FIECLKVLEGALGDRPYFGGESFGFVDIALIGFYSWFYAYETFG--NFSTEAECPKFVAWAKR 190          
BLAST of FC923655 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.189e-41
Identity = 85/197 (43.15%), Postives = 126/197 (63.96%), Query Frame = 1
Query:  121 KSDVKVLGFWPSPFLMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFSAL-RDIGSANGAEAKKAAXXXXXXXXXXXXDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNXVKLLDEVKTPWTVQWAERF 708
            + DVK+LG   SPF+ R +IALK+K VEY+FLEENLG+KS+LLLK NPVHKK+PV +HN++P+ ESL+IVEY+DE W ++   ILPSDPY RA+ARFW+ ++D+K   A+ + + + +  E +K              +      K K FFGG + G +DIA      W+ + +++  ++L    K P   +W++ F
Sbjct:    5 QEDVKLLGIVGSPFVCRVQIALKLKGVEYKFLEENLGNKSDLLLKYNPVHKKVPVFVHNEQPIAESLVIVEYIDETWKNN--PILPSDPYQRALARFWSKFIDDKIVGAVSKSVFTVDEKEREKNVEETYEALQFLENEL-----KDKKFFGGEEFGLVDIAAVFIAFWIPIFQEIAGLQLFTSEKFPILYKWSQEF 194          
BLAST of FC923655 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.049e-39
Identity = 85/196 (43.37%), Postives = 116/196 (59.18%), Query Frame = 1
Query:  115 MAKSDVKVLGFWPSPFLMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAXXXXXXXXXXXXDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNXVKLLDEVKTPWTVQWAE 702
            M  ++V +L FWPS F MR RIAL +K ++YE  EENL  KS LLL+ NPVHKKIP+LIHN K +CESL I+EY+DE W    P +LPSDPY+R+ ARFWA Y+D+K +S  R + S  G + ++A             +        K +FGG+ +GF+D+A   +  W    E      +  E + P  V WA+
Sbjct:    1 MESNNVVLLDFWPSSFGMRLRIALALKGIKYEAKEENLSDKSPLLLEMNPVHKKIPILIHNSKAICESLNILEYIDEVWHDKCP-LLPSDPYERSQARFWADYIDKKIYSTGRRVWSGKGEDQEEAKKEFIEILKTLEGEL-----GNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSI--EAECPKLVVWAK 188          
BLAST of FC923655 vs. ExPASy Swiss-Prot
Match: GSTX1_SOLTU (Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.266e-38
Identity = 88/196 (44.90%), Postives = 120/196 (61.22%), Query Frame = 1
Query:  124 SDVKVLGFWPSPFLMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAXXXXXXXXXXXXDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNXVKLLDEVKTPWTVQWAERFC 711
            ++VK+LG   SPF  R   ALKIK V+YEF+EE+L +KS LLL+SNP+HKKIPVLIHN K +CES++I+EY+DEA+   GPSILP DPYDRA+ARFWA YV++K  +  +   S  G E +KA             +      K K  F G++ GF DI       +L + E+++ + L    K P    W + +C
Sbjct:    2 AEVKLLGLRYSPFSHRVEWALKIKGVKYEFIEEDLQNKSPLLLQSNPIHKKIPVLIHNGKCICESMVILEYIDEAF--EGPSILPKDPYDRALARFWAKYVEDKGAAVWKSFFS-KGEEQEKAKEEAYEMLKILDNE-----FKDKKCFVGDKFGFADIVANGAALYLGILEEVSGIVLATSEKFPNFCAWRDEYC 189          
BLAST of FC923655 vs. ExPASy Swiss-Prot
Match: GSTX2_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.865e-38
Identity = 88/195 (45.13%), Postives = 120/195 (61.54%), Query Frame = 1
Query:  124 SDVKVLGFWPSPFLMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAXXXXXXXXXXXXDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNXVKLLDEVKTPWTVQWAERF 708
            ++VK+LGFW SPF  R   ALKIK V+YE++EE+  +KS LLL+SNPV+KK+PVLIHN KP+ ES+II+EY+DE +   GPSILP DPYDRA+ARFWA ++D+K  +A+ +     G E +K              +      K K FF G++ GF DIA      WL V E+     L+   K P   +W + +
Sbjct:    2 AEVKLLGFWYSPFSHRVEWALKIKGVKYEYIEEDRDNKSSLLLQSNPVYKKVPVLIHNGKPIVESMIILEYIDETF--EGPSILPKDPYDRALARFWAKFLDDK-VAAVVNTFFRKGEEQEKGKEEVYEMLKVLDNEL-----KDKKFFAGDKFGFADIAANLVGFWLGVFEEGYGDVLVKSEKFPNFSKWRDEY 188          
BLAST of FC923655 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.865e-38
Identity = 86/191 (45.03%), Postives = 118/191 (61.78%), Query Frame = 1
Query:  124 SDVKVLGFWPSPFLMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAXXXXXXXXXXXXDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNXVKLLDEVKTPWTVQW 696
            ++VK+LGFW SPF  R   ALKIK V+YE++EE+  +KS LLL+SNP+HKK+PVLIHN K + ES++I+EY+DE +   GPSILP DPYDRA+ARFWA ++D+K  + ++      G E +K              +      K K FF G++ GF DIA      WL V E+ + V L+   K P   +W
Sbjct:    2 AEVKLLGFWYSPFSRRVEWALKIKGVKYEYIEEDRDNKSSLLLQSNPIHKKVPVLIHNGKRIVESMVILEYIDETF--EGPSILPKDPYDRALARFWAKFLDDKVPAVVKTF-LRKGEEQEKDKEEVCEMLKVLDNEL-----KDKKFFVGDKFGFADIAANLVAFWLGVFEEASGVVLVTSEKFPNFCKW 184          
BLAST of FC923655 vs. ExPASy Swiss-Prot
Match: GSTX3_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.592e-38
Identity = 86/195 (44.10%), Postives = 120/195 (61.54%), Query Frame = 1
Query:  124 SDVKVLGFWPSPFLMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAXXXXXXXXXXXXDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGWLRVTEKMNXVKLLDEVKTPWTVQWAERF 708
            ++VK+LGFW SPF  R   ALK+K V+YE++EE+  +KS LLL+SNPVHKK+PVLIHN KP+ ES++I+EY+DE +   GPSILP DPYDRA+ARFW+ ++ +K  +A+ +     G E +K              +      K K FF G++ GF DIA      WL V E+   V L+   K P   +W + +
Sbjct:    2 AEVKLLGFWYSPFTHRVEWALKLKGVKYEYIEEDRDNKSSLLLQSNPVHKKVPVLIHNGKPIVESMVILEYIDETF--EGPSILPKDPYDRALARFWSKFLGDK-VAAVVNTFFRKGEEQEKGKEEVYEMLKVLDNEL-----KDKKFFVGDKFGFADIAANLVGFWLGVFEEGYGVVLVTSEKFPNFSRWRDEY 188          
BLAST of FC923655 vs. ExPASy Swiss-Prot
Match: GSTX1_NICPL (Probable glutathione S-transferase MSR-1 OS=Nicotiana plumbaginifolia GN=MSR-1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.770e-36
Identity = 78/170 (45.88%), Postives = 104/170 (61.18%), Query Frame = 1
Query:  115 MAKSDVKVLGFWPSPFLMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKWFSALRDIGSANGAEAKKAAXXXXXXXXXXXXDAFVKCSKGKAFFGGNQIGFLDIAFGSYLGW 624
            M  ++V +L F  S F MR RIAL +K ++YE  EENL  KS LLL+ NPVHKKIP+LIHN KP+CESL I+EY+DE W    P +LPSDPY R+ ARFWA Y+D K +S  R + S  G + ++A             +        K +FGG+ +GF+D+A   +  W
Sbjct:    1 MESNNVVLLDFSGSSFGMRLRIALALKGIKYEAKEENLSDKSPLLLEMNPVHKKIPILIHNGKPICESLNILEYIDEVWHEKCP-LLPSDPYQRSQARFWANYIDNKIYSTGRRVWSGKGEDQEEAKKEFIEIFKTLEGEL-----GNKTYFGGDNLGFVDVALVPFTSW 164          
The following BLAST results are available for this feature:
BLAST of FC923655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GSTU6_ORYSJ3.048e-5149.28Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTX4_TOBAC1.791e-4345.10Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXC_TOBAC1.161e-4244.12Probable glutathione S-transferase parC OS=Nicotia... [more]
GSTX6_SOYBN2.189e-4143.15Probable glutathione S-transferase OS=Glycine max ... [more]
GSTXA_TOBAC2.049e-3943.37Probable glutathione S-transferase parA OS=Nicotia... [more]
GSTX1_SOLTU2.266e-3844.90Probable glutathione S-transferase OS=Solanum tube... [more]
GSTX2_TOBAC3.865e-3845.13Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX1_TOBAC3.865e-3845.03Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX3_TOBAC6.592e-3844.10Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX1_NICPL2.770e-3645.88Probable glutathione S-transferase MSR-1 OS=Nicoti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31707E08EF StrClemenN Citrus clementina cDNA clone C31707E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923655 ID=FC923655; Name=FC923655; organism=Citrus clementina; type=EST; length=727bp
AGTGGCGTAGTTCACATCCCCTACATTCATCTGGCTCTAATTATAAATAC
ACAGCCCACGAAGCAAAAGACATTTCATTTCAGTTGCGAGAGCAGAGCTT
AGAGAGAAAAAAAAATGGCAAAAAGCGACGTGAAGGTTTTGGGTTTTTGG
CCAAGCCCATTTCTGATGAGGGCAAGAATCGCACTTAAGATCAAGTCTGT
GGAGTATGAGTTTCTGGAGGAGAATTTGGGATCCAAAAGCGAGCTTCTGC
TTAAATCAAACCCTGTTCACAAGAAAATCCCCGTTCTGATTCACAATGAT
AAGCCTGTTTGCGAATCTCTCATTATTGTCGAGTACGTGGATGAGGCTTG
GTCCTCTTCAGGTCCCTCTATTCTTCCTTCTGATCCTTACGACCGTGCCG
TTGCTCGTTTCTGGGCCGCTTACGTTGATGAGAAGTGGTTCTCTGCCTTG
AGAGACATTGGTAGTGCAAATGGAGCGGAAGCTAAGAAAGCTGCAATTGA
GCAATTGATTGAAGTCTTGGTTTTGCTGGAGGATGCTTTTGTTAAGTGTA
GCAAAGGGAAGGCTTTCTTTGGTGGAAACCAAATTGGGTTTCTTGACATT
GCATTTGGTAGCTACTTGGGATGGCTGAGAGTGACAGAGAAAATGAATGA
NGTGAAGCTCCTTGATGAAGTCAAAACTCCCTGGACTGTTCAATGGGCTG
AGAGATTCTGTGCTGACGCTGCTGTCA
back to top