FC923664

Overview
NameFC923664
Unique NameFC923664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923664_ssr84 microsatellite FC923664_ssr84:84..97. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15411 contig Ccv1_Contig15411:102..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923664 vs. ExPASy Swiss-Prot
Match: TOM20_SOLTU (Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 9.091e-74
Identity = 139/194 (71.65%), Postives = 152/194 (78.35%), Query Frame = 2
Query:  104 MDMQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFA 685
            M+MQS+FDRLLFFEHARK+AE  YA++PLDADNLTRWGGALLELSQFQ V +SK+MI DA SKLEEAL V+P +HD LWCLGNAHTSH FLTPD DEAK YF KAT  FQQA D +PSN+LY+KSLEV AKAPELHMEIH+HG  QQTM                      DLKYDIFGWVILAVGIVAWVGFA
Sbjct:    1 MEMQSEFDRLLFFEHARKSAETTYAQNPLDADNLTRWGGALLELSQFQPVAESKQMISDATSKLEEALTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFDADPSNDLYRKSLEVTAKAPELHMEIHRHGPMQQTM---AAEPSTSTSTKSSKKTKSSDLKYDIFGWVILAVGIVAWVGFA 191          
BLAST of FC923664 vs. ExPASy Swiss-Prot
Match: TO203_ARATH (Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis thaliana GN=TOM20-3 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.938e-56
Identity = 105/194 (54.12%), Postives = 134/194 (69.07%), Query Frame = 2
Query:  104 MDMQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFA 685
            MD +++FDR+L FE  R+ AE  Y  +PLDADNLTRWGG LLELSQF ++ D+K+MI +AI+K EEAL++ P + + +WC+GNA+TS AFLTPD+ EAK  F+ AT +FQQAVDE+P N  Y KSLE+ AKAP+LH E +K GLG Q M                      D KYD  GWVILA+G+VAW+ FA
Sbjct:    1 MDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGLGSQPM--GRVEAPAPPSSKAVKNKKSSDAKYDAMGWVILAIGVVAWISFA 192          
BLAST of FC923664 vs. ExPASy Swiss-Prot
Match: TO202_ARATH (Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis thaliana GN=TOM20-2 PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 7.236e-55
Identity = 101/198 (51.01%), Postives = 135/198 (68.18%), Query Frame = 2
Query:  116 SDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTM-----XXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFANPI 694
            +DF+RL+ FEHARK +EA Y  DPLD++NL +WGGALLELSQFQ +P++K M+ DAISKLEEAL ++P +H  LWC+ NA+T+HAF   D +EAKE+F+KAT YFQ+A +E+P N+ Y+KSL+ + KAPELHM+    G+GQQ +                           +  YD+ GW+ILA GIVAWVG A  +
Sbjct:    6 ADFERLIMFEHARKNSEAQYKNDPLDSENLLKWGGALLELSQFQPIPEAKLMLNDAISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENEDPGNDTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGGGGGGMASSNVSQSSKKKKRNTEFTYDVCGWIILACGIVAWVGMAKSL 203          
BLAST of FC923664 vs. ExPASy Swiss-Prot
Match: TO204_ARATH (Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis thaliana GN=TOM20-4 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.412e-50
Identity = 103/195 (52.82%), Postives = 129/195 (66.15%), Query Frame = 2
Query:  104 MDMQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAN 688
            MDMQ++ +RL+ FEHARK AEA Y K+PLDA+NLTRW GALLELSQFQT P  K+MIL+AI KL EAL++ P +HD LW +GNAH S  FL+ DQ EA + F KA+ +FQ AV+E+P +ELY+KSL +A+KAPELH                                   + KYD+FGWVILA  +VAW+ FAN
Sbjct:    1 MDMQNENERLMVFEHARKVAEATYVKNPLDAENLTRWAGALLELSQFQTEP--KQMILEAILKLGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEEQPESELYRKSLTLASKAPELHT--------------GGTAGPSSNSAKTMKQKKTSEFKYDVFGWVILASYVVAWISFAN 179          
BLAST of FC923664 vs. ExPASy Swiss-Prot
Match: TOM20_ORYSJ (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. japonica GN=TOM20 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.663e-49
Identity = 99/194 (51.03%), Postives = 126/194 (64.95%), Query Frame = 2
Query:  104 MDMQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFA 685
            M   SD +R+ FF+ A + A+  Y ++P DADNLTRWGGALLELSQ +  P+S K + DA SKLEEAL + P + D LWCLGNA TSH F T D  +A E+F KAT  FQ+AVD EP+N+LY+KSL++++KAPELHMEIH+    Q +                       D  YD+FGWV+L VG+V WVG A
Sbjct:    3 MGAMSDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHRQMASQASQ----AASSTSNTRQSRKKKKDSDFWYDVFGWVVLGVGMVVWVGLA 192          
BLAST of FC923664 vs. ExPASy Swiss-Prot
Match: TOM20_ORYSI (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. indica GN=TOM20 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.663e-49
Identity = 99/194 (51.03%), Postives = 126/194 (64.95%), Query Frame = 2
Query:  104 MDMQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFA 685
            M   SD +R+ FF+ A + A+  Y ++P DADNLTRWGGALLELSQ +  P+S K + DA SKLEEAL + P + D LWCLGNA TSH F T D  +A E+F KAT  FQ+AVD EP+N+LY+KSL++++KAPELHMEIH+    Q +                       D  YD+FGWV+L VG+V WVG A
Sbjct:    3 MGAMSDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHRQMASQASQ-----AASSTSNTRQSRKKKDSDFWYDVFGWVVLGVGMVVWVGLA 191          
BLAST of FC923664 vs. ExPASy Swiss-Prot
Match: TO201_ARATH (Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis thaliana GN=TOM20-1 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.975e-44
Identity = 96/191 (50.26%), Postives = 122/191 (63.87%), Query Frame = 2
Query:  125 DRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGL-----GQQTMXXXXXXXXXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGF 682
            D+L FFE  RK AE  Y  +P DADNL RWG ALLELSQFQ V DS KMI DAISKLE+A+++ P +HD +WCLGNA+TS+A LTPD  +A+  F  A L+F  AV ++P N++Y KSLE+A KAP+LH   HK+ L     G +T+                      D KY + GWVILA+G+VA + F
Sbjct:    2 DKLNFFEEIRKDAEETYKLNPEDADNLMRWGEALLELSQFQNVIDSLKMIQDAISKLEDAILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAVAQQPDNQVYHKSLEMADKAPQLHTGFHKNRLLSLLGGVETL--------AIPSPKVVKNKKSSDEKYIVMGWVILAIGVVACISF 184          
The following BLAST results are available for this feature:
BLAST of FC923664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TOM20_SOLTU9.091e-7471.65Mitochondrial import receptor subunit TOM20 OS=Sol... [more]
TO203_ARATH2.938e-5654.12Mitochondrial import receptor subunit TOM20-3 OS=A... [more]
TO202_ARATH7.236e-5551.01Mitochondrial import receptor subunit TOM20-2 OS=A... [more]
TO204_ARATH1.412e-5052.82Mitochondrial import receptor subunit TOM20-4 OS=A... [more]
TOM20_ORYSJ2.663e-4951.03Probable mitochondrial import receptor subunit TOM... [more]
TOM20_ORYSI2.663e-4951.03Probable mitochondrial import receptor subunit TOM... [more]
TO201_ARATH1.975e-4450.26Mitochondrial import receptor subunit TOM20-1 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionC31707F05EF StrClemenN Citrus clementina cDNA clone C31707F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923664 ID=FC923664; Name=FC923664; organism=Citrus clementina; type=EST; length=697bp
AGGGTTTCAGCGAACTTTCACACACACGCAGAGAGACTCTAGTCTCGTTC
ATCTGTCAGTACAAAGCAATAAAGAGAGGGCGCGAGAGAGAGAGAGACAC
GCCATGGACATGCAAAGCGACTTCGATAGATTGCTCTTCTTTGAACACGC
TCGCAAAACCGCCGAAGCTGCCTACGCCAAGGACCCTCTCGATGCCGATA
ATTTAACGAGATGGGGCGGTGCTCTTCTGGAGTTGTCCCAGTTTCAAACT
GTTCCAGATTCAAAGAAGATGATATTAGATGCAATTTCAAAGCTGGAGGA
GGCATTGATGGTTAGCCCCAACAGACACGACACATTGTGGTGTTTGGGAA
ATGCTCATACTTCTCATGCTTTTTTGACTCCTGACCAGGATGAGGCCAAG
GAGTATTTCAATAAGGCAACTCTGTACTTTCAGCAAGCAGTTGATGAGGA
ACCCTCGAATGAGCTTTATCAGAAGTCTTTAGAGGTGGCTGCAAAGGCTC
CGGAGTTGCACATGGAAATCCACAAGCATGGTTTAGGTCAACAAACAATG
GGGCCATCTACTGGACCTTCTTCTACTTCTTCGGGTGCAAAGACTTCAAA
GAAGAAGAAAAGCAGTGATCTCAAATACGACATATTTGGATGGGTAATCC
TGGCTGTCGGCATTGTTGCATGGGTTGGATTTGCAAATCCCATATGC
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