FC923694

Overview
NameFC923694
Unique NameFC923694
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923694 vs. ExPASy Swiss-Prot
Match: ZMAT2_MOUSE (Zinc finger matrin-type protein 2 OS=Mus musculus GN=Zmat2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.089e-32
Identity = 63/90 (70.00%), Postives = 78/90 (86.67%), Query Frame = 1
Query:  277 PVQRKPLKHRDYVVDLESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERFELLKKR 546
            PV+R+ L+HRDY VDLES+LGKT V+T   P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++LDQV++RFE+ KK+
Sbjct:   43 PVKRELLRHRDYKVDLESKLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFEVNKKK 132          
BLAST of FC923694 vs. ExPASy Swiss-Prot
Match: ZMAT2_HUMAN (Zinc finger matrin-type protein 2 OS=Homo sapiens GN=ZMAT2 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.089e-32
Identity = 63/90 (70.00%), Postives = 78/90 (86.67%), Query Frame = 1
Query:  277 PVQRKPLKHRDYVVDLESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERFELLKKR 546
            PV+R+ L+HRDY VDLES+LGKT V+T   P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++LDQV++RFE+ KK+
Sbjct:   43 PVKRELLRHRDYKVDLESKLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFEVNKKK 132          
BLAST of FC923694 vs. ExPASy Swiss-Prot
Match: YO14_CAEEL (Putative zinc finger protein ZK686.4 OS=Caenorhabditis elegans GN=ZK686.4 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 49/92 (53.26%), Postives = 73/92 (79.35%), Query Frame = 1
Query:  274 PPVQRKPLKHRDYVVDLESRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERFELLKKRK 549
            P V+R+ L+ R+Y VDL+S++GK+ V+T   P ++  G+YC VC+CVVKDS N+LDHINGK HQR +GMSM+ +++++  VRERF+L+K +K
Sbjct:  242 PKVKREMLQAREYKVDLDSKVGKSVVITKATPSAETGGFYCDVCDCVVKDSINFLDHINGKNHQRNIGMSMKTKKSTVADVRERFKLMKDKK 333          
The following BLAST results are available for this feature:
BLAST of FC923694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZMAT2_MOUSE5.089e-3270.00Zinc finger matrin-type protein 2 OS=Mus musculus ... [more]
ZMAT2_HUMAN5.089e-3270.00Zinc finger matrin-type protein 2 OS=Homo sapiens ... [more]
YO14_CAEEL4.613e-2553.26Putative zinc finger protein ZK686.4 OS=Caenorhabd... [more]
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Properties
Property NameValue
Genbank descriptionC31707H12EF StrClemenN Citrus clementina cDNA clone C31707H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923694 ID=FC923694; Name=FC923694; organism=Citrus clementina; type=EST; length=700bp
GATTTCGATTGTCATTCATGTTACTTACAACTCTCTCTTTCGAGCTTAAT
TTCAGTTGCGTTAATCAATGGCTGATAACAACCCTGCTGGAGTTGATAAC
ACTTTCAGAAGAAAATTCGATCGAGAAGAGTACTTAGAACGCGCTCGCGA
ACGTGAAAGAGAAGAGGCGGATGGTCGGTCTAAATCGAAAGGTAAGATTC
TAATGTGTGTATTAAATTAATGTGATTAATAGTTGATATTTTTGCTATTA
ATTTTTTGTTTCCAGCAAAAGGTCCTCCAGTGCAAAGGAAACCCTTGAAG
CATAGGGACTATGTAGTTGACCTTGAATCTCGATTGGGCAAAACCCAAGT
TGTTACTCCAATAGCTCCTTTAAGCCAACAGGCTGGATACTACTGTTCTG
TTTGCGAGTGTGTAGTTAAGGATTCAGCTAACTACTTGGATCATATAAAT
GGGAAAAAACATCAAAGAGCTTTGGGTATGTCTATGCGGGTTGAACGAGC
ATCTCTTGACCAGGTCCGTGAGCGATTTGAATTGCTCAAGAAGAGGAAAG
TCCCTGGCAGCTTCTCAGAGCAAGATCTTGATGAGCGGATCATAAAACAG
CAGGAAGAAGAAGAGGAACGGAGGCGTCAACGTCGAGAGAAAAAGAAAGA
GAAGAAGAAAGAGAAGGCNGCTGTAGAAGAAGGAAACTGAATGGATCCTG
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