FC923727

Overview
NameFC923727
Unique NameFC923727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length439
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3817 contig Ccv1_Contig3817:1..439. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923727 vs. ExPASy Swiss-Prot
Match: ISCU_MOUSE (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus musculus GN=Iscu PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.407e-28
Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = 1
Query:    4 EETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCGMLAEDAIKAAVKDYEAKR 237
            +E G+IVDA FKTFGCGSAIASSS+ATEWVKGK ++E L+IKNT+IAK L LPPVKLHC MLAEDAIKAA+ DY+ K+
Sbjct:   81 DEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ 158          
BLAST of FC923727 vs. ExPASy Swiss-Prot
Match: ISCU_HUMAN (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo sapiens GN=ISCU PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.407e-28
Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = 1
Query:    4 EETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCGMLAEDAIKAAVKDYEAKR 237
            +E G+IVDA FKTFGCGSAIASSS+ATEWVKGK ++E L+IKNT+IAK L LPPVKLHC MLAEDAIKAA+ DY+ K+
Sbjct:   80 DEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ 157          
BLAST of FC923727 vs. ExPASy Swiss-Prot
Match: ISU1_DEBHA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Debaryomyces hansenii GN=ISU1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.920e-27
Identity = 60/80 (75.00%), Postives = 66/80 (82.50%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCGMLAEDAIKAAVKDYEAKRT 240
            D+ETG I D  FKTFGCGSAIASSS  TE VKGK I+E + IKNT IAK LSLPPVKLHC MLAEDAIK+AVKDY +KR+
Sbjct:   82 DDETGVIKDVKFKTFGCGSAIASSSYLTELVKGKTIEEAVKIKNTAIAKELSLPPVKLHCSMLAEDAIKSAVKDYRSKRS 161          
BLAST of FC923727 vs. ExPASy Swiss-Prot
Match: NIFU_RICPR (NifU-like protein OS=Rickettsia prowazekii GN=nifU PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.105e-26
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 1
Query:   19 IVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCGMLAEDAIKAAVKDYEAKR 237
            I DA FKTFGCGSAIASSS+ TEW+KGK +++   IKNTEIAK LSLPPVKLHC +LAEDAIKAA+ DY+ KR
Sbjct:   53 ITDAKFKTFGCGSAIASSSLVTEWIKGKSVEDAKEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIADYKQKR 125          
BLAST of FC923727 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAP (NifU-like protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nifU PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.105e-26
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCGMLAEDAIKAAVKDYEAKRTK 243
            E G I DACFKT+GCGSAIASSS+ TEW+KGK I E  +IKNT I + L LPPVK+HC +LAEDAIKAA+ DY++K+ K
Sbjct:   49 EQGIIEDACFKTYGCGSAIASSSLVTEWIKGKSITEAEAIKNTSIVEELELPPVKIHCSILAEDAIKAAISDYKSKKNK 127          
BLAST of FC923727 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAI (NifU-like protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nifU PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.279e-26
Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCGMLAEDAIKAAVKDYEAKR 237
            E G I DACFKT+GCGSAIASSS+ TEWVKGK I+E  SIKNT I + L LPPVK+HC +LAEDAIKAA+ DY+ K+
Sbjct:   49 EKGIIEDACFKTYGCGSAIASSSLVTEWVKGKSIEEAESIKNTTIVEELDLPPVKIHCSILAEDAIKAAISDYKRKK 125          
BLAST of FC923727 vs. ExPASy Swiss-Prot
Match: ISU1_KLULA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Kluyveromyces lactis GN=ISU1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.279e-26
Identity = 56/79 (70.89%), Postives = 66/79 (83.54%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCGMLAEDAIKAAVKDYEAKR 237
            ++ETG I +  FKTFGCGSAIASSS  TE V+GK +++   IKNTEIA+ LSLPPVKLHC MLAEDAIKAA+KDY+AKR
Sbjct:   96 NDETGVIENVKFKTFGCGSAIASSSYMTELVRGKTLEDAAKIKNTEIARELSLPPVKLHCSMLAEDAIKAAIKDYQAKR 174          
BLAST of FC923727 vs. ExPASy Swiss-Prot
Match: NIFU_SHIFL (NifU-like protein OS=Shigella flexneri GN=nifU PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.340e-24
Identity = 52/77 (67.53%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCGMLAEDAIKAAVKDYEAKR 237
            + G I DA FKT+GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HC +LAEDAIKAA+ DY++KR
Sbjct:   49 DEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
BLAST of FC923727 vs. ExPASy Swiss-Prot
Match: NIFU_ECOLI (NifU-like protein OS=Escherichia coli (strain K12) GN=nifU PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.340e-24
Identity = 52/77 (67.53%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCGMLAEDAIKAAVKDYEAKR 237
            + G I DA FKT+GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HC +LAEDAIKAA+ DY++KR
Sbjct:   49 DEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
BLAST of FC923727 vs. ExPASy Swiss-Prot
Match: NIFU_ECOL6 (NifU-like protein OS=Escherichia coli O6 GN=nifU PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.340e-24
Identity = 52/77 (67.53%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCGMLAEDAIKAAVKDYEAKR 237
            + G I DA FKT+GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HC +LAEDAIKAA+ DY++KR
Sbjct:   49 DEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
The following BLAST results are available for this feature:
BLAST of FC923727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ISCU_MOUSE3.407e-2875.64Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISCU_HUMAN3.407e-2875.64Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISU1_DEBHA4.920e-2775.00Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_RICPR7.105e-2673.97NifU-like protein OS=Rickettsia prowazekii GN=nifU... [more]
NIFU_BUCAP7.105e-2667.09NifU-like protein OS=Buchnera aphidicola subsp. Sc... [more]
NIFU_BUCAI9.279e-2670.13NifU-like protein OS=Buchnera aphidicola subsp. Ac... [more]
ISU1_KLULA9.279e-2670.89Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_SHIFL1.340e-2467.53NifU-like protein OS=Shigella flexneri GN=nifU PE=... [more]
NIFU_ECOLI1.340e-2467.53NifU-like protein OS=Escherichia coli (strain K12)... [more]
NIFU_ECOL61.340e-2467.53NifU-like protein OS=Escherichia coli O6 GN=nifU P... [more]

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Properties
Property NameValue
Genbank descriptionC31708C09EF StrClemenN Citrus clementina cDNA clone C31708C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923727 ID=FC923727; Name=FC923727; organism=Citrus clementina; type=EST; length=439bp
GATGAAGAGACTGGTCAGATCGTCGACGCCTGCTTCAAGACCTTCGGCTG
TGGCTCGGCCATCGCTTCATCTTCTGTTGCAACGGAATGGGTGAAAGGGA
AGCAGATACAGGAAGTCTTGTCCATTAAAAACACGGAAATTGCAAAACAT
CTTTCTCTACCACCTGTTAAACTGCATTGCGGCATGCTTGCTGAAGATGC
TATCAAGGCTGCTGTAAAAGATTACGAAGCTAAACGTACCAAACCAAGTG
CTGCTTCAGAGGCAGAACCAGCTCCAAGGGCTGCTGATGTTTGAAGATAT
TGATGTAAACATTTGAAAATGATGTTAATGTTCTGCCTGTGGAGATGTAT
CAGGATAACTGCACCTCCTAAAGATTGATGTCGTGTGGTGGAGGGGGTAA
AGTTTATGGTTATTAGTAAGAACTGTGTATGAATAATGA
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