FC923738
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: GRSF1_MOUSE (G-rich sequence factor 1 OS=Mus musculus GN=Grsf1 PE=1 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14 Identity = 53/171 (30.99%), Postives = 77/171 (45.03%), Query Frame = 2 Query: 284 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP-----------------------------HRSIPRAKSHDEGKDSAVHTGIL------RLRGLPFSAGKDEHMDFF 685 VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E + + SP + I K E AV G L +RGLPF A + ++FF Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFF 420
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: GRSF1_HUMAN (G-rich sequence factor 1 OS=Homo sapiens GN=GRSF1 PE=1 SV=3) HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14 Identity = 52/173 (30.06%), Postives = 82/173 (47.40%), Query Frame = 2 Query: 284 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY------YKA-----------------------IANEVSDVRGGSPHRSIPRAK--------SHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685 VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++R+ +G RY+E+F S+R E YK + ++ + + I K + D G S++H + +RGLPF A + ++FF Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFF 421
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: ESRP2_RAT (Epithelial splicing regulatory protein 2 OS=Rattus norvegicus GN=Esrp2 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13 Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = 2 Query: 284 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDF 682 VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K G + R S ++ ILRLRGLPFSAG + +DF Sbjct: 247 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKI---------AGGTSLEVARFLSRED-------QVILRLRGLPFSAGPADVLDF 366
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: HNRPF_MACFA (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12 Identity = 51/139 (36.69%), Postives = 72/139 (51.80%), Query Frame = 2 Query: 284 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685 VV+LRGLP+ C+ DV F I D V F++ + + +GEAF LG V AL+++R++MG RY+EVF+S R E + + S DSA + G +RLRGLPF K+E + FF Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: HNRPF_HUMAN (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12 Identity = 51/139 (36.69%), Postives = 72/139 (51.80%), Query Frame = 2 Query: 284 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685 VV+LRGLP+ C+ DV F I D V F++ + + +GEAF LG V AL+++R++MG RY+EVF+S R E + + S DSA + G +RLRGLPF K+E + FF Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: ESRP2_MOUSE (Epithelial splicing regulatory protein 2 OS=Mus musculus GN=Esrp2 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12 Identity = 49/136 (36.03%), Postives = 70/136 (51.47%), Query Frame = 2 Query: 284 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDF 682 VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K G + R S ++ ILRLRGLPFSAG + + F Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKI---------AGGTSLEVARFLSRED-------QVILRLRGLPFSAGPTDVLGF 367
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: ESRP2_HUMAN (Epithelial splicing regulatory protein 2 OS=Homo sapiens GN=ESRP2 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12 Identity = 48/136 (35.29%), Postives = 70/136 (51.47%), Query Frame = 2 Query: 284 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDF 682 VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR++ +MG RY+EV+++ +E+ K G + R S ++ ILRLRGLPFSAG + + F Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKI---------AGGTSLEVARFLSRED-------QVILRLRGLPFSAGPTDVLGF 377
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: HNRPF_RAT (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus GN=Hnrnpf PE=1 SV=3) HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11 Identity = 50/139 (35.97%), Postives = 71/139 (51.08%), Query Frame = 2 Query: 284 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685 VV+LRGLP+ C+ DV F I D V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R E + + S DSA + G +RLRGLPF K+E + FF Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: HNRPF_MOUSE (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf PE=1 SV=3) HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11 Identity = 50/139 (35.97%), Postives = 71/139 (51.08%), Query Frame = 2 Query: 284 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685 VV+LRGLP+ C+ DV F I D V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R E + + S DSA + G +RLRGLPF K+E + FF Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: HNRPF_BOVIN (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11 Identity = 49/139 (35.25%), Postives = 71/139 (51.08%), Query Frame = 2 Query: 284 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685 VV+LRGLP+ C+ DV F I D V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R E + + S D+A + G +RLRGLPF K+E + FF Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADTA-NDGFVRLRGLPFGCTKEEIIQFF 131 The following BLAST results are available for this feature:
BLAST of FC923738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923738 ID=FC923738; Name=FC923738; organism=Citrus clementina; type=EST; length=730bpback to top |