FC923738

Overview
NameFC923738
Unique NameFC923738
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14404 contig Ccv1_Contig14404:2..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: GRSF1_MOUSE (G-rich sequence factor 1 OS=Mus musculus GN=Grsf1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 53/171 (30.99%), Postives = 77/171 (45.03%), Query Frame = 2
Query:  284 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP-----------------------------HRSIPRAKSHDEGKDSAVHTGIL------RLRGLPFSAGKDEHMDFF 685
            VVRLRGLP+ C E D+ +FF GL+IVD+ FV  ++  + TGEA+     P   + AL ++R+ +G RY+E+F S+R E    + +        SP                              + I   K   E    AV  G L       +RGLPF A   + ++FF
Sbjct:  250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFF 420          
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: GRSF1_HUMAN (G-rich sequence factor 1 OS=Homo sapiens GN=GRSF1 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 52/173 (30.06%), Postives = 82/173 (47.40%), Query Frame = 2
Query:  284 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY------YKA-----------------------IANEVSDVRGGSPHRSIPRAK--------SHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685
            VVRLRGLP+ C E D+ +FF GL+IVD+ FV  ++  + TGEA+     P   + AL ++R+ +G RY+E+F S+R E       YK                        +  ++  +      + I   K        + D G  S++H   + +RGLPF A   + ++FF
Sbjct:  251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFF 421          
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: ESRP2_RAT (Epithelial splicing regulatory protein 2 OS=Rattus norvegicus GN=Esrp2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = 2
Query:  284 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDF 682
            VVR RGLP+  ++ DVA FF GL+I      L ++   +  GEA        Q D ALQR++ +MG RY+EV+++  +E+ K           G     + R  S ++         ILRLRGLPFSAG  + +DF
Sbjct:  247 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKI---------AGGTSLEVARFLSRED-------QVILRLRGLPFSAGPADVLDF 366          
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: HNRPF_MACFA (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 51/139 (36.69%), Postives = 72/139 (51.80%), Query Frame = 2
Query:  284 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685
            VV+LRGLP+ C+  DV  F     I D    V F++ +  + +GEAF  LG    V  AL+++R++MG RY+EVF+S R E    + +                  S     DSA + G +RLRGLPF   K+E + FF
Sbjct:   12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131          
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: HNRPF_HUMAN (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 51/139 (36.69%), Postives = 72/139 (51.80%), Query Frame = 2
Query:  284 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685
            VV+LRGLP+ C+  DV  F     I D    V F++ +  + +GEAF  LG    V  AL+++R++MG RY+EVF+S R E    + +                  S     DSA + G +RLRGLPF   K+E + FF
Sbjct:   12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131          
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: ESRP2_MOUSE (Epithelial splicing regulatory protein 2 OS=Mus musculus GN=Esrp2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 49/136 (36.03%), Postives = 70/136 (51.47%), Query Frame = 2
Query:  284 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDF 682
            VVR RGLP+  ++ DVA FF GL+I      L ++   +  GEA        Q D ALQR++ +MG RY+EV+++  +E+ K           G     + R  S ++         ILRLRGLPFSAG  + + F
Sbjct:  248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKI---------AGGTSLEVARFLSRED-------QVILRLRGLPFSAGPTDVLGF 367          
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: ESRP2_HUMAN (Epithelial splicing regulatory protein 2 OS=Homo sapiens GN=ESRP2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 48/136 (35.29%), Postives = 70/136 (51.47%), Query Frame = 2
Query:  284 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDF 682
            VVR RGLP+  ++ DVA FF GL++      L ++   +  GEA        Q D ALQR++ +MG RY+EV+++  +E+ K           G     + R  S ++         ILRLRGLPFSAG  + + F
Sbjct:  258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYIEVYKATGEEFVKI---------AGGTSLEVARFLSRED-------QVILRLRGLPFSAGPTDVLGF 377          
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: HNRPF_RAT (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 50/139 (35.97%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  284 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685
            VV+LRGLP+ C+  DV  F     I D    V F++ +  + +GEAF  L     V  AL+++R++MG RY+EVF+S R E    + +                  S     DSA + G +RLRGLPF   K+E + FF
Sbjct:   12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131          
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: HNRPF_MOUSE (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 50/139 (35.97%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  284 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685
            VV+LRGLP+ C+  DV  F     I D    V F++ +  + +GEAF  L     V  AL+++R++MG RY+EVF+S R E    + +                  S     DSA + G +RLRGLPF   K+E + FF
Sbjct:   12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFF 131          
BLAST of FC923738 vs. ExPASy Swiss-Prot
Match: HNRPF_BOVIN (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 49/139 (35.25%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  284 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDEHMDFF 685
            VV+LRGLP+ C+  DV  F     I D    V F++ +  + +GEAF  L     V  AL+++R++MG RY+EVF+S R E    + +                  S     D+A + G +RLRGLPF   K+E + FF
Sbjct:   12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADTA-NDGFVRLRGLPFGCTKEEIIQFF 131          
The following BLAST results are available for this feature:
BLAST of FC923738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GRSF1_MOUSE2.299e-1430.99G-rich sequence factor 1 OS=Mus musculus GN=Grsf1 ... [more]
GRSF1_HUMAN8.737e-1430.06G-rich sequence factor 1 OS=Homo sapiens GN=GRSF1 ... [more]
ESRP2_RAT7.397e-1336.76Epithelial splicing regulatory protein 2 OS=Rattus... [more]
HNRPF_MACFA1.262e-1236.69Heterogeneous nuclear ribonucleoprotein F OS=Macac... [more]
HNRPF_HUMAN1.262e-1236.69Heterogeneous nuclear ribonucleoprotein F OS=Homo ... [more]
ESRP2_MOUSE4.794e-1236.03Epithelial splicing regulatory protein 2 OS=Mus mu... [more]
ESRP2_HUMAN6.262e-1235.29Epithelial splicing regulatory protein 2 OS=Homo s... [more]
HNRPF_RAT1.395e-1135.97Heterogeneous nuclear ribonucleoprotein F OS=Rattu... [more]
HNRPF_MOUSE1.395e-1135.97Heterogeneous nuclear ribonucleoprotein F OS=Mus m... [more]
HNRPF_BOVIN2.379e-1135.25Heterogeneous nuclear ribonucleoprotein F OS=Bos t... [more]

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Properties
Property NameValue
Genbank descriptionC31708D08EF StrClemenN Citrus clementina cDNA clone C31708D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923738 ID=FC923738; Name=FC923738; organism=Citrus clementina; type=EST; length=730bp
AAATGCAGGGAGAGCAAGAAGCTCGAAGAAACACAAAGATTAAGAAATAA
ACAAGGGTTAAAAAAAAAAAAAAATTTGGATAGCTCACGGCTCAACTATT
TCAAATTTAAGAATGTTCTACAGAGGCAAGTTTGCTGAGGGTGCTGATGG
GCGTGAAATGGGGGCAAAGCGTCAACGGTTGATTGATCAGGGACCTTCAT
TTTATGGAACTCCCCCAAGTTCAAGTTTTATGTACAATCCACCACCAGCT
TATGGGTACGTTAGCCAACCTCCACCTTTCCCAGTTGTCCGACTTCGCGG
TCTTCCCTTTGATTGTACAGAAGTTGATGTTGCTGAGTTTTTCCATGGTC
TAGACATAGTCGATGTTCTTTTTGTCCATAAGAACAACAAATTTACAGGA
GAAGCTTTTTGTGTGCTGGGGTATCCTCTTCAAGTCGATTTTGCCCTGCA
GAGGAATAGGCAGAACATGGGAAGGAGGTATGTTGAGGTTTTCAGAAGTA
AGAGGCAGGAATATTATAAGGCAATAGCAAATGAAGTTTCTGATGTTCGT
GGTGGTTCACCACATAGGAGTATCCCTAGGGCTAAATCTCATGATGAGGG
GAAGGATTCAGCTGTACATACAGGGATACTGCGATTGAGAGGATTGCCAT
TTTCAGCAGGCAAGGATGAACATATGGATTTCTTTAAAGATTTTGTGNTG
TCGGAAGACTCGATTCATATTACTATGAAT
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