FC923766

Overview
NameFC923766
Unique NameFC923766
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14536 contig Ccv1_Contig14536:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC923766 vs. ExPASy Swiss-Prot
Match: TL17_ARATH (Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At5g53490 PE=1 SV=2)

HSP 1 Score: 281.567 bits (719), Expect = 2.802e-75
Identity = 149/221 (67.42%), Postives = 172/221 (77.83%), Query Frame = 2 
Query:   41 MATISVPLSHNTSSLQHLSTIRHRFHFPRSSHSPLTVACSA---RRNSSEPKESFSHLKELKGVACGFLAAWAVTAASPVIAANQRLPPLSTEPDRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKSNLKGKSLAAALMSDAKFDGADMSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKAHLEGAVFKNTVLSGSTFNEAQLXDAVFEDTIIGYIDL 694
            MA++ V  + N  S    S      +  R   S +TV CSA   R N    K+S   LKEL  +AC  L A  +T ASPVIAANQRLPPLSTEPDRCE+AFVGNTIGQANGVYDKP+DLRFCDYTN+++NLKGK+L+AALM  AKFDGADM+EVVMSKAYAV ASFKGV+F+NAV+DRVNFGK++L+GAVF+NTVLSGSTF EA L D VFEDTIIGYIDL
Sbjct:    1 MASLPVQFTRNQISSPFFSV-----NLRREPRSLVTVHCSAGENRENGEGVKKSLFPLKELGSIACAALCACTLTIASPVIAANQRLPPLSTEPDRCEKAFVGNTIGQANGVYDKPLDLRFCDYTNDQTNLKGKTLSAALMVGAKFDGADMTEVVMSKAYAVEASFKGVNFTNAVIDRVNFGKSNLKGAVFRNTVLSGSTFEEANLEDVVFEDTIIGYIDL 216
The following BLAST results are available for this feature:
BLAST of FC923766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TL17_ARATH2.802e-7567.42Thylakoid lumenal 17.4 kDa protein, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionC31708F12EF StrClemenN Citrus clementina cDNA clone C31708F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923766 ID=FC923766; Name=FC923766; organism=Citrus clementina; type=EST; length=694bp
AGACACTGAAAGAAAGAGAGTCTCCCACACAACACAACAGATGGCTACCA
TTTCAGTTCCCCTCTCTCATAACACTTCATCTCTTCAACATTTATCCACT
ATACGCCACCGTTTTCACTTTCCCAGATCGTCCCATTCACCCCTCACAGT
CGCTTGCTCTGCTAGAAGAAATTCCTCAGAACCAAAGGAAAGCTTTTCTC
ATTTAAAGGAACTCAAGGGCGTAGCTTGTGGCTTTCTTGCTGCTTGGGCT
GTAACGGCTGCCTCACCCGTCATTGCTGCTAATCAGAGGCTGCCCCCGCT
TTCAACAGAGCCTGATCGATGTGAGCGTGCATTTGTTGGAAACACGATTG
GTCAAGCAAATGGCGTTTACGACAAGCCAATTGATCTGCGCTTCTGTGAT
TACACTAATGAAAAATCCAACCTCAAGGGGAAGTCTCTTGCGGCAGCACT
CATGTCTGATGCAAAGTTTGATGGTGCGGATATGTCAGAAGTGGTTATGT
CAAAGGCTTACGCTGTGGGAGCAAGCTTCAAGGGTGTAGACTTCTCGAAT
GCTGTTTTAGACCGGGTAAATTTTGGGAAAGCACATCTTGAAGGAGCTGT
TTTCAAGAATACTGTATTATCTGGCTCCACTTTTAATGAAGCTCAACTAC
NAGATGCAGTTTTTGAGGACACAATTATAGGCTACATTGATCTC
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