FC923777

Overview
NameFC923777
Unique NameFC923777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10550 contig Ccv1_Contig10550:394..1115. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923777 vs. ExPASy Swiss-Prot
Match: PPCS_HUMAN (Phosphopantothenate--cysteine ligase OS=Homo sapiens GN=PPCS PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.825e-40
Identity = 89/189 (47.09%), Postives = 111/189 (58.73%), Query Frame = 3
Query:  171 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFFECFEVTKESAVQVCQPYSE-----AVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMVAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDIQLLQVPKMLSVLREEWAP 722
            RRV  VTSGGT VPLE R VR++DNFSSG RGA S E  +  GY V+FLYR  +  PY    P   +      +  +   +    +E         A+R +  A A G  L + FTT+ +YL +LQ  A +   LGP +MFYLAAAVSDFYVP   M EHKIQS  GPL I +  VPK+LS L ++WAP
Sbjct:   35 RRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLAVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIQSSGGPLQITMKMVPKLLSPLVKDWAP 223          
BLAST of FC923777 vs. ExPASy Swiss-Prot
Match: PPCS_MOUSE (Phosphopantothenate--cysteine ligase OS=Mus musculus GN=Ppcs PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.055e-40
Identity = 86/189 (45.50%), Postives = 113/189 (59.79%), Query Frame = 3
Query:  171 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFFECFEVTKES-----AVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMVAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDIQLLQVPKMLSVLREEWAP 722
            RRV  +TSGGT VPLE R VR++DNFSSG RGAAS E  +  GY V+FLYR  +  PY    P  A+      +  +     +++  +        A++ +  A A G  L + FTT+ +YL +LQ  A++   LG  +MFYLAAAVSDFY+P   M EHKI S  GPL I +  VPKMLS L ++WAP
Sbjct:   35 RRVVLITSGGTKVPLEARAVRFLDNFSSGRRGAASAEVFLAAGYGVLFLYRARSAFPYAHRFPPQAWLSALRPSGPAQSGKLSLEAEENALPGFAAALQSYQEAAAAGTFLAVEFTTLADYLHLLQAAALALSPLGSSAMFYLAAAVSDFYIPVSEMPEHKIHSSGGPLQITMKMVPKMLSPLVKDWAP 223          
BLAST of FC923777 vs. ExPASy Swiss-Prot
Match: YJ2I_SCHPO (Uncharacterized protein C4B3.18 OS=Schizosaccharomyces pombe GN=SPCC4B3.18 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.708e-38
Identity = 93/227 (40.97%), Postives = 134/227 (59.03%), Query Frame = 3
Query:   54 PLNSEIESFFDSAPPLNDRAAISEKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSL--PDDAFFECFEVTKESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMVAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG--PLDIQLLQVPKMLSVLREEWAP 722
            P   +   FF+  P  N    +S  +++FI L   +S ++ +A VTSGGT VPLEQ  VR+IDNFS+G+RGAAS E+  K GY+VIFLYR  +  P+      P    FE    ++E    V Q +   V  A+ +         L+ +P+TT+ EYL  L+ +A   + +   ++FYLAAAVSDF++P K ++EHKIQSGSG   L++++  VPK L  L + WAP
Sbjct:    2 PEMDKSNDFFEENPCPNSLGDVSSLIEDFINL---QSNSQNIAFVTSGGTLVPLEQNTVRFIDNFSAGNRGAASAEYFCKSGYSVIFLYRNYSLMPFTRRYEGPWTNLFERSNGSQEKPWIVKQEFQSTVFNALNELDTYTKHHRLIMIPYTTLTEYLWYLKAIAERLQIIASRALFYLAAAVSDFHIPPKELSEHKIQSGSGSNKLEVKMHPVPKFLRFLVDTWAP 225          
BLAST of FC923777 vs. ExPASy Swiss-Prot
Match: YII3_YEAST (Uncharacterized protein YIL083C OS=Saccharomyces cerevisiae GN=YIL083C PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.661e-28
Identity = 90/240 (37.50%), Postives = 125/240 (52.08%), Query Frame = 3
Query:   63 SEIESFFDSAPPLNDRAAISEKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFFECFEVTKESAVQVCQPYSEAV--KRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMVAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSG-------------------SGPLDIQLLQVPKMLSVLREEWA 719
            +E E +F + P       + +  KEFI L  S     ++  +TSGGTTVPLE   VR+IDNFS+G RGA+S E  +  GY+VIFL+R  +  PY  S    +    F    +S  ++   ++E V   + + D +      LLL LPFTT+ +YL  L+ +A    + G   +FYLAAAVSDF+VP+  + +HKIQSG                    G L + L  VPK L  L E WA
Sbjct:   38 TEEEQYFKTNPKPAYIDELIKDAKEFIDLQYSLK-RNKIVLITSGGTTVPLENNTVRFIDNFSAGTRGASSAEQFLANGYSVIFLHREFSLTPYNRSF-SHSINTLFLDYIDSEGKIKPEFAENVLKNKKLYDKYMEKEEKLLL-LPFTTVNQYLWSLKSIAKLLNNSG--CLFYLAAAVSDFFVPYSRLPQHKIQSGDNGKMGANNDTEGTTRTTPDGKLIVNLDPVPKFLRRLVESWA 272          
The following BLAST results are available for this feature:
BLAST of FC923777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PPCS_HUMAN1.825e-4047.09Phosphopantothenate--cysteine ligase OS=Homo sapie... [more]
PPCS_MOUSE9.055e-4045.50Phosphopantothenate--cysteine ligase OS=Mus muscul... [more]
YJ2I_SCHPO1.708e-3840.97Uncharacterized protein C4B3.18 OS=Schizosaccharom... [more]
YII3_YEAST4.661e-2837.50Uncharacterized protein YIL083C OS=Saccharomyces c... [more]
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Properties
Property NameValue
Genbank descriptionC31708G11EF StrClemenN Citrus clementina cDNA clone C31708G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923777 ID=FC923777; Name=FC923777; organism=Citrus clementina; type=EST; length=722bp
GGCTTCCTATTTGCCAATATATGTTTTATGCAGGCAACCGAGAAATGGAT
TCGCCGCTGAACTCAGAAATCGAATCATTTTTTGATTCGGCTCCGCCTCT
CAATGACCGCGCCGCTATCAGCGAGAAATTGAAGGAATTCATTGCACTGA
ATTCGTCAGAATCAGGAACAAGAAGAGTGGCGTGTGTGACATCCGGCGGC
ACAACTGTGCCACTGGAGCAACGCTGTGTCCGTTATATTGATAATTTCAG
CTCAGGCCACAGAGGAGCTGCTTCTACTGAGCATTTAATTAAGATGGGAT
ATGCTGTTATTTTCTTGTACCGAAGGGGAACTTGCGAGCCATATTGCAGT
TCTCTCCCTGATGATGCGTTTTTTGAATGTTTTGAGGTCACTAAGGAGTC
AGCAGTTCAAGTCTGCCAACCTTATTCCGAAGCAGTGAAGAGAGCCATTA
GGGATCATCATGCTGCAGTAGCAGGAGGCCTTCTGTTGAAGCTTCCCTTT
ACAACTATATTCGAGTATCTTCAGATGCTACAGATGGTTGCTGTATCTTC
TAGGAGTCTTGGACCATGTTCTATGTTCTATCTTGCTGCTGCTGTTTCTG
ACTTCTATGTCCCATGGAAAAGCATGGCAGAGCACAAGATTCAGTCAGGT
TCTGGCCCTTTGGACATTCAACTTTTGCAGGTGCCAAAAATGCTCTCAGT
TCTCAGGGAAGAATGGGCACCC
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