FC923945

Overview
NameFC923945
Unique NameFC923945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923945_ssr178 microsatellite FC923945_ssr178:178..187. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15418 contig Ccv1_Contig15418:144..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC923945 vs. ExPASy Swiss-Prot
Match: Y4115_ARATH (Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.901e-16
Identity = 47/103 (45.63%), Postives = 65/103 (63.11%), Query Frame = 3 
Query:  387 AVPKEESPVDGLTNELLDNLKIKFDS-EDKYSLVLYXXXXXXXXXXXXXXXXXIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKAQVLGS 692
            A  +E S +D  TNEL+ +LK K+D  E+K ++++Y                 I+S+PL PK+ME+VGLGYT WF +RYLLFK +R ELA  IE LK ++ GS
Sbjct:   63 ASSEETSSID--TNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGS 163
The following BLAST results are available for this feature:
BLAST of FC923945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4115_ARATH8.901e-1645.63Uncharacterized protein At4g01150, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionC31710G10EF StrClemenN Citrus clementina cDNA clone C31710G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923945 ID=FC923945; Name=FC923945; organism=Citrus clementina; type=EST; length=713bp
GAAGGGTAAGCCGTGGAAGCTAATCTGTGCCTCACTTCACGCTCACGTCT
TAAACGCTGAGGAGGCTACTGAAAATGGAGCTCTGTACAGCCACACAAAC
ACAGTCAGCCATCTCCAATCACCACCACCCATTCCTCACCACCACTACAG
CCCCTGCTCTCGTCCGCACCAAATCCGCTCTCTCTCTCAAGCAAACCACA
GTCTCCTGCTCCGGTTATGGCCTACGCTCCCGAATTCTCTATTATACCAA
CCCATTGCCAAAAGCAACCTCTGAAGAAACTTCAAGTGGAACAGATCAGT
ATGTTGTGGATAAACGAGATGGTGCGACGGCAGCTGAAGATGTTCCGGCA
GTTGAAAAGAATGTGTACAATGAAAGTGTGGCTACTGCAGTACCTAAAGA
GGAATCACCTGTGGATGGGCTGACTAATGAACTTTTGGACAACCTTAAAA
TAAAGTTTGACTCTGAAGATAAATATTCACTTGTTCTATATGGAACCGGT
GCTTTGCTTGCTCTGTGGTTAACAACAGTGGTGGTTGGTGCAATAGATTC
TATTCCATTGTTTCCTAAGTTGATGGAAGTAGTGGGTCTTGGATACACAT
TGTGGTTCAGCTGGCGTTATCTGTTATTCAAGAAAAATAGAGATGAGCTG
GCCACTAAAATTGAGGAACTCAAAGCACAGGTCCTTGGCTCAAATGATGA
TTGATATGAAAGA
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