FC923955

Overview
NameFC923955
Unique NameFC923955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14573 contig Ccv1_Contig14573:1..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923955 vs. ExPASy Swiss-Prot
Match: FKBP7_ARATH (Probable FKBP-type peptidyl-prolyl cis-trans isomerase 7, chloroplastic OS=Arabidopsis thaliana GN=At5g13410 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.144e-46
Identity = 90/119 (75.63%), Postives = 98/119 (82.35%), Query Frame = 2 
Query:  314 LIVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDYFKFRLGSQDVIPAFEEAVSGMALGGVRRIIVADTLQISHFTSQ*CRIIVPPEIGYPENDYNKSGPRPTTFSGQRALDFVLRNQG 670
            ++VDWDGYTIGYYGRIFEARNKTKGGSFEGDDK++FKF LGS +VIPAFEEAVSGMALGG+R                  RIIVPPE+GYP+NDYNKSGPRP TFSGQRALDFVLRNQG
Sbjct:  138 VVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKEFFKFTLGSNEVIPAFEEAVSGMALGGIR------------------RIIVPPELGYPDNDYNKSGPRPMTFSGQRALDFVLRNQG 238
The following BLAST results are available for this feature:
BLAST of FC923955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FKBP7_ARATH1.144e-4675.63Probable FKBP-type peptidyl-prolyl cis-trans isome... [more]
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Properties
Property NameValue
Genbank descriptionC31710H12EF StrClemenN Citrus clementina cDNA clone C31710H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923955 ID=FC923955; Name=FC923955; organism=Citrus clementina; type=EST; length=670bp
TCAATTTCAGCTCTTGCATCTTCTTCATCTTCCTCTGCTATTAAACCTTC
CTCTTCGGTACGTCATCGTTTTCATTCCAAAAATAATACCCCTTTGTTGT
TTCACAGACAATTAGCTCCTCAATCTCTCCACCACCCACATCAATTCAAC
GGTTCATCTTCCTACGATACTTTTTTTTTTTTAGGTGAAATTAGTCATAC
AAGTAACCGACAAGTCGTTGAGCGAAGGGGAGTGCTAATATCATCCATTG
GATTATTAGCTGTGGCCTTGTTCAATGCTTCAAAGGATGGAGTAGTTTTA
GCAGCTGAATTTGCTGATAGTTGACTGGGATGGTTACACCATAGGATACT
ATGGTCGCATATTTGAGGCTCGAAACAAGACAAAGGGCGGTTCCTTTGAG
GGTGATGACAAGGACTATTTTAAATTTCGACTCGGATCTCAAGATGTAAT
TCCAGCTTTTGAGGAAGCTGTCTCAGGCATGGCTCTGGGTGGTGTTAGAA
GGATTATAGTGGCCGATACTCTGCAAATTTCGCATTTTACTTCACAGTGA
TGCAGGATCATAGTGCCCCCTGAAATTGGATATCCTGAGAATGACTACAA
CAAAAGTGGCCCAAGGCCAACTACATTTTCGGGCCAGCGAGCCTTGGATT
TTGTGCTGAGGAACCAAGGA
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